Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY17_RS09975 Genome accession   NZ_CP046782
Coordinates   263400..264125 (-) Length   241 a.a.
NCBI ID   WP_029831092.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1244     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 258400..269125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY17_RS09950 - 259519..260010 (+) 492 WP_005458943.1 type II secretion system protein M -
  GPY17_RS09955 - 260012..260773 (+) 762 WP_042772205.1 type II secretion system protein N -
  GPY17_RS09960 cysQ 261059..261886 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY17_RS09965 nudE 261928..262497 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  GPY17_RS09970 nfuA 262718..263302 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GPY17_RS09975 comF 263400..264125 (-) 726 WP_029831092.1 amidophosphoribosyltransferase Machinery gene
  GPY17_RS09980 bioH 264210..264977 (+) 768 WP_031815826.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY17_RS09985 - 265101..265565 (+) 465 WP_005459035.1 hypothetical protein -
  GPY17_RS09990 - 265701..268022 (-) 2322 WP_025522200.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27687.82 Da        Isoelectric Point: 8.8474

>NTDB_id=407635 GPY17_RS09975 WP_029831092.1 263400..264125(-) (comF) [Vibrio parahaemolyticus strain 2013V-1244]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=407635 GPY17_RS09975 WP_029831092.1 263400..264125(-) (comF) [Vibrio parahaemolyticus strain 2013V-1244]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment