Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SSUD9_RS01920 Genome accession   NC_017620
Coordinates   361835..362623 (+) Length   262 a.a.
NCBI ID   WP_014636806.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 356835..367623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS01895 (SSUD9_0372) - 357133..358092 (-) 960 WP_014636805.1 asparaginase -
  SSUD9_RS11545 - 358162..359527 (+) 1366 Protein_333 Cof-type HAD-IIB family hydrolase -
  SSUD9_RS01910 (SSUD9_0375) - 359543..359995 (-) 453 WP_004194294.1 universal stress protein -
  SSUD9_RS01915 (SSUD9_0376) - 360150..361364 (+) 1215 WP_002937606.1 pyridoxal phosphate-dependent aminotransferase -
  SSUD9_RS01920 (SSUD9_0377) codY 361835..362623 (+) 789 WP_014636806.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SSUD9_RS01925 (SSUD9_0378) - 362625..363175 (+) 551 Protein_337 cysteine hydrolase family protein -
  SSUD9_RS01930 (SSUD9_0379) - 363458..364660 (+) 1203 WP_013730352.1 IS110-like element ISSsu7 family transposase -
  SSUD9_RS01935 (SSUD9_0380) - 364848..365755 (-) 908 Protein_339 DMT family transporter -
  SSUD9_RS01940 (SSUD9_0381) galT 365830..367311 (-) 1482 WP_009909376.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29293.36 Da        Isoelectric Point: 4.6797

>NTDB_id=40755 SSUD9_RS01920 WP_014636806.1 361835..362623(+) (codY) [Streptococcus suis D9]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTTIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=40755 SSUD9_RS01920 WP_014636806.1 361835..362623(+) (codY) [Streptococcus suis D9]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTACCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACACTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

51.626

93.893

0.485

Multiple sequence alignment