Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   SSUD9_RS01280 Genome accession   NC_017620
Coordinates   228986..231319 (+) Length   777 a.a.
NCBI ID   WP_014636773.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 223986..236319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS10755 (SSUD9_0234) - 225344..226634 (-) 1291 Protein_209 IS4-like element ISSsu2 family transposase -
  SSUD9_RS01265 (SSUD9_0236) treR 226809..227521 (+) 713 Protein_210 trehalose operon repressor -
  SSUD9_RS01270 (SSUD9_0237) - 227579..227890 (+) 312 WP_002935948.1 hypothetical protein -
  SSUD9_RS01275 (SSUD9_0238) - 227887..228435 (+) 549 WP_002935945.1 CvpA family protein -
  SSUD9_RS01280 (SSUD9_0239) mutS/mutS2 228986..231319 (+) 2334 WP_014636773.1 endonuclease MutS2 Machinery gene
  SSUD9_RS01285 (SSUD9_0240) - 231485..231877 (+) 393 WP_014636774.1 DUF1310 family protein -
  SSUD9_RS11315 - 231870..232040 (+) 171 WP_234944242.1 hypothetical protein -
  SSUD9_RS01290 (SSUD9_0242) - 232160..232537 (+) 378 WP_002935940.1 DUF1310 family protein -
  SSUD9_RS01295 (SSUD9_0243) - 232584..232841 (+) 258 WP_002935939.1 hypothetical protein -
  SSUD9_RS01300 (SSUD9_0244) - 232936..233325 (+) 390 WP_002935938.1 DUF1310 family protein -
  SSUD9_RS01305 (SSUD9_0245) - 233318..234568 (+) 1251 WP_002935930.1 Mbeg1-like protein -
  SSUD9_RS01310 (SSUD9_0246) - 234670..235050 (+) 381 WP_002935927.1 DUF1310 family protein -
  SSUD9_RS01315 (SSUD9_0247) - 235057..236319 (+) 1263 WP_014636776.1 esterase/lipase family protein -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87633.38 Da        Isoelectric Point: 6.6127

>NTDB_id=40753 SSUD9_RS01280 WP_014636773.1 228986..231319(+) (mutS/mutS2) [Streptococcus suis D9]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVQRIQQAFDELTDIAQIFVENPYFSLSATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKSLLDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEEISHLRAEER
HELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRAKHLFAREHQAVVPKLSEKQDIALLNVRHPLIAKPVPNDLYFGSQ
LTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVQILAEAD
QDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDTNSLRPTYKFMQGVPG
RSNAFEIARRLGLSDIIIQSAQFWTDTDSDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENE
LNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIQREAKVGDDIIVTAY
GQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFI
DQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=40753 SSUD9_RS01280 WP_014636773.1 228986..231319(+) (mutS/mutS2) [Streptococcus suis D9]
ATGAATAATAAAATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTCTTGACGGAACAGGG
CTTTGAAGAATTACGACAGTTGGAGCCCATGGTGGAAGTCCAACGTATCCAACAGGCCTTCGACGAGTTGACAGACATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGTCTGTCAGCTACTAGTGACATTGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAATTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAATCTCTCTTGGATTTTTATGG
AAATCTGGAAAATGTCAGTCTTAGCCAGCTGGATAAACTCTTTGAGAAGATTGAGCTTTTTCCACATTTACAGGGCTCCC
TCCAGTCCATCAATGATGCTGGTTTTGTAGAGGATTTTGCCTCAGAAAAGCTGGCTCGTATTAGAAGAAAAATCCGTGAA
GCTGAAGATCAAGTTCGTCAGGTCATGCAGGATATTTTGAAGACCAAGGGCGACATGCTGTCCGATAGTATTTTGGCAAG
CCGTAATGGACGCAATGTCCTTCCTGTTAAAAATACCTATCGCAATAAGATTGCGGGTGTAGTCCATGATATCTCCGCTT
CTGGCTCGACGGTTTATATTGAGCCGCGGGCAGTGGTGACCTTGAACGAAGAAATCAGTCACCTACGTGCAGAAGAACGC
CATGAGCTCAACCGTATCCTGCAGGAATTATCGGATATGCTCCGTCCGCATAGTGGTGTGATCCGTAACAATGCCTGGCT
TATCGGGCATATTGATTTCGTCCGTGCTAAGCATCTCTTTGCACGTGAACATCAAGCAGTTGTACCCAAACTATCTGAGA
AGCAGGATATTGCTCTTCTCAACGTTCGACATCCGCTCATTGCTAAGCCTGTACCAAATGACCTTTATTTCGGTAGTCAG
TTGACGGCTATCGTGATAACAGGTCCCAACACAGGTGGTAAGACCATCATGCTTAAGACCTTGGGATTGACCCATCTGAT
GGCCCAGTCTGGTTTGCCTATCTTGGCTGACAAGGGCAGTCGGGTAGCTATCTTCAAAGAAATTTTTGCGGACATTGGAG
ACGAACAGTCCATCGAGCAGAGTTTATCGACCTTCTCCAGTCACATGACCCACACGGTACAGATTTTGGCGGAGGCGGAT
CAAGATTCCCTCATTCTATTTGATGAGTTGGGAGCTGGGACAGATCCGCAGGAGGGTGCGTCCTTGGCAATGGCTATTTT
GGATGACCTTCGTCTGCGGGGGATCAAGACCATGGCGACCACCCACTACCCTGAGCTTAAGGCCTACGGGATAGAAACCT
CTGGTATTGAAAATGCCAGCATGGAGTTTGATACCAATAGCCTGCGTCCGACCTATAAGTTTATGCAGGGTGTTCCTGGT
CGCTCCAATGCCTTTGAAATTGCTCGCCGTCTTGGTCTATCTGATATTATTATCCAGTCAGCCCAATTTTGGACGGATAC
AGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGTCAGACGGTTGAAAGTCGTCAGCGTCTGGATAAGATTCGTG
ATGTGGAGCAAGAAAATTACAAGATGAACCGAGCCCTCCGCAAGCTCTATGACGAGCTCAATCGTGAGAGGGAAAATGAG
CTCAACAAGGCACGCTTGGAAGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGATATTCTCAAAAATCTCCA
TGCTGCAGCTAGTCTTAAGCCCCACCAGATTATCGAAGCCAAGGCAGAGCTGAAAAAGTTGGCGCCTGAAGTGGTGGATC
TGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTCAGAGGGAAGCCAAGGTGGGCGATGACATTATCGTTACAGCTTAT
GGACAACGCGGGACCTTGACCAATCAGCTCAAGGACGGGCGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTTGGC
CAAAGATGAGTTTGAGTTAGTCAAGGCGGAGAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCACACAGTCAAACGTGCCA
ATGTACGAGGACCAAAAGCCCGCTTAGATCTCCGTGGCAAACGCTACGAAGAGGCTATGATGGAGCTGGATGAATTTATC
GATCAGGCCCTTCTCAATAACCTAGCCCAAGTCGATATTGTCCACGGTATAGGTACAGGTGTCATCCGAGAAGGGGTGAC
CAAGTACCTACGCCGAAACAAGCAGGTCAAGGAGTTCGGCTATGCCCCACAAAATGCAGGTGGATCAGGCTGTACTATTG
TGACGTTTAAATAA

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-502)

Smr domain (Smr)

(702-777)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.52

100

0.403

Multiple sequence alignment