Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY46_RS09790 Genome accession   NZ_CP046776
Coordinates   207016..207741 (-) Length   241 a.a.
NCBI ID   WP_025542060.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM43962     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 202016..212741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY46_RS09765 - 203136..203627 (+) 492 WP_005458943.1 type II secretion system protein M -
  GPY46_RS09770 - 203629..204390 (+) 762 WP_005496730.1 type II secretion system protein N -
  GPY46_RS09775 cysQ 204676..205503 (-) 828 WP_025518553.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY46_RS09780 nudE 205544..206113 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  GPY46_RS09785 nfuA 206334..206918 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GPY46_RS09790 comF 207016..207741 (-) 726 WP_025542060.1 amidophosphoribosyltransferase Machinery gene
  GPY46_RS09795 bioH 207826..208593 (+) 768 WP_029786485.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY46_RS09800 - 208717..209181 (+) 465 WP_005459035.1 hypothetical protein -
  GPY46_RS09805 - 209317..211638 (-) 2322 WP_140110638.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27706.86 Da        Isoelectric Point: 8.9991

>NTDB_id=407498 GPY46_RS09790 WP_025542060.1 207016..207741(-) (comF) [Vibrio parahaemolyticus strain AM43962]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=407498 GPY46_RS09790 WP_025542060.1 207016..207741(-) (comF) [Vibrio parahaemolyticus strain AM43962]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTAGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCATGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment