Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY59_RS09680 Genome accession   NZ_CP046772
Coordinates   302749..303474 (-) Length   241 a.a.
NCBI ID   WP_158173560.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297749..308474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS09655 - 298902..299393 (+) 492 WP_005383002.1 type II secretion system protein M -
  GPY59_RS09660 - 299395..300156 (+) 762 WP_158173559.1 type II secretion system protein N -
  GPY59_RS09665 cysQ 300449..301276 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY59_RS09670 nudE 301321..301890 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  GPY59_RS09675 nfuA 302067..302651 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  GPY59_RS09680 comF 302749..303474 (-) 726 WP_158173560.1 phosphoribosyltransferase family protein Machinery gene
  GPY59_RS09685 bioH 303559..304326 (+) 768 WP_199266747.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY59_RS09690 - 304451..304915 (+) 465 WP_005379316.1 hypothetical protein -
  GPY59_RS09695 - 305020..307341 (-) 2322 WP_158173562.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27814.07 Da        Isoelectric Point: 9.7697

>NTDB_id=407452 GPY59_RS09680 WP_158173560.1 302749..303474(-) (comF) [Vibrio alginolyticus strain 2014V-1011]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARQLAKQLQTNFDA
KVFRRVRLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=407452 GPY59_RS09680 WP_158173560.1 302749..303474(-) (comF) [Vibrio alginolyticus strain 2014V-1011]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACAACTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAGGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.539

100

0.705
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477

Multiple sequence alignment