Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HZT24_RS01620 Genome accession   NZ_CP058879
Coordinates   353674..354438 (-) Length   254 a.a.
NCBI ID   WP_001136211.1    Uniprot ID   -
Organism   Escherichia coli strain STLEFF_29     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 348674..359438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT24_RS01595 (HZT24_01575) yhhJ 350517..351641 (+) 1125 WP_001314210.1 ABC transporter permease -
  HZT24_RS01600 (HZT24_01580) - 351714..351989 (+) 276 WP_001260301.1 type II toxin-antitoxin system HicA family toxin -
  HZT24_RS01605 (HZT24_01585) - 351986..352345 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  HZT24_RS01610 (HZT24_01590) nikR 352465..352866 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  HZT24_RS01615 (HZT24_01595) nikE 352871..353677 (-) 807 WP_061092823.1 nickel import ATP-binding protein NikE -
  HZT24_RS01620 (HZT24_01600) amiE 353674..354438 (-) 765 WP_001136211.1 nickel import ATP-binding protein NikD Regulator
  HZT24_RS01625 (HZT24_01605) nikC 354438..355271 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  HZT24_RS01630 (HZT24_01610) nikB 355268..356212 (-) 945 WP_000947080.1 nickel ABC transporter permease subunit NikB -
  HZT24_RS01635 (HZT24_01615) nikA 356212..357786 (-) 1575 WP_000493131.1 nickel ABC transporter substrate-binding protein -
  HZT24_RS01640 (HZT24_01620) acpT 357897..358484 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.45 Da        Isoelectric Point: 6.9016

>NTDB_id=407434 HZT24_RS01620 WP_001136211.1 353674..354438(-) (amiE) [Escherichia coli strain STLEFF_29]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=407434 HZT24_RS01620 WP_001136211.1 353674..354438(-) (amiE) [Escherichia coli strain STLEFF_29]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTTCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCGGATGACGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment