Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY10_RS16930 Genome accession   NZ_CP046768
Coordinates   436349..438397 (+) Length   682 a.a.
NCBI ID   WP_158152095.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2013V-1300     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 431349..443397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY10_RS16920 - 432025..433166 (+) 1142 Protein_437 exonuclease SbcCD subunit D -
  GPY10_RS16925 - 433170..436210 (+) 3041 Protein_438 SbcC/MukB-like Walker B domain-containing protein -
  GPY10_RS16930 cqsS 436349..438397 (+) 2049 WP_158152095.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY10_RS16935 cqsA 438433..439614 (-) 1182 WP_158152096.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY10_RS16940 - 439833..440789 (-) 957 WP_199251259.1 TDT family transporter -
  GPY10_RS16945 clcA 440954..442351 (-) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 79204.80 Da        Isoelectric Point: 5.3014

>NTDB_id=407434 GPY10_RS16930 WP_158152095.1 436349..438397(+) (cqsS) [Vibrio fluvialis strain 2013V-1300]
MEVVKKIYQYAEPNLTLVGWMGFIGFPLYYYIWQYVFPQPYESLLLRSFCSCLFGGIAFRNSVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLLQAAISILAAYGAVYWIQHYEPQQYILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQNNISRGAHIDEQDLTLLHEILDNADDV
IHTGNETIDLLLTSIDENRVSRSTFRKQSAREVVDYALHSFSYKRAIDRQSVTLVVEDDFDYFGSDTLLKFALYNLLKNA
FYYQNSEQFHIDVTLKNQGNQNLIVVKDNGVGIAPDRIDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIACASVLGE
WTEFTLSFPLYESQEVSHIKLDLMKNKSVLYIGTQGLMSRHLSETSFYQGFRLHLVTLQEALVREEYEFEYDAIVLDLEQ
IEDHWQSVVELESKLHFTEAQIVYLFDKQREYPINIERHLRVTPLDIRQMLRDTDKELDKLFFDVAELVQDRNVIPQKKQ
TYERRILVVDDNQSLRTFTALMLEKQGYEVVQANDGQQALDAVESSDFDLILMDIEMPFIDGIEATRVIRDSDKPYRHIP
IVGHTGDNSPMTIEKIHKSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=407434 GPY10_RS16930 WP_158152095.1 436349..438397(+) (cqsS) [Vibrio fluvialis strain 2013V-1300]
ATGGAAGTAGTAAAGAAAATTTACCAGTATGCTGAGCCTAACCTCACCCTTGTAGGGTGGATGGGCTTTATTGGTTTTCC
ACTCTACTACTATATTTGGCAGTACGTCTTTCCACAGCCATACGAATCGTTGCTGCTACGCAGCTTTTGTTCGTGTTTGT
TCGGTGGTATCGCGTTTCGTAATTCCGTGCCCAAATTGTGGCAGCGGTATCTGCCGTATTATTACCTGTTTATGATAGGT
TTCTGCCTACCATTCTTCTTCGCTTATATGATGCTGATGAATGACTGGTCGACCGTATGGGCGATGTCCTTTATGGCATC
AATATTCCTGCACATTCTGCTGGTGCATGAGACCAAAGTTATGCTGCTCCAGGCCGCGATATCCATATTGGCAGCCTACG
GTGCGGTGTATTGGATTCAGCACTATGAACCGCAACAGTACATTTTGTGGCCGTACGTACCGATTTTCCTGTTCACCTAT
GTGTTTGGTAACCTGTTTTATTTCAGGAACCAGAGCTCTCACGAATCAAAAGTCTCCATCGCCAAATCGTTCGGAGCGGG
CATCGCGCATGAAATGCGTAACCCGCTGAGTGCATTGAAGTCATCGGTTGATGTATTGCGCTCCATTCTTCCGGCTCAAA
ATAACATCTCACGTGGCGCGCATATTGATGAGCAAGATCTGACGTTGCTGCATGAGATTCTCGATAATGCCGACGACGTT
ATTCACACCGGTAATGAAACCATCGATCTGTTACTGACCTCGATCGATGAGAACCGAGTATCGCGTTCCACGTTCAGGAA
GCAGTCGGCGCGCGAAGTCGTTGACTACGCGTTGCATTCGTTCTCCTACAAGCGTGCGATTGATCGTCAATCGGTGACTT
TAGTGGTCGAGGACGACTTCGACTATTTCGGCAGTGATACGCTGTTGAAATTTGCATTGTATAACTTGCTGAAAAACGCC
TTCTATTATCAGAACAGCGAGCAGTTCCATATTGATGTCACCCTGAAAAACCAGGGCAATCAGAACCTCATCGTGGTCAA
AGATAACGGCGTAGGCATTGCGCCGGATCGCATCGACGATATTTTTAAAGATTTTTATACCTTCGGTAAAAATGGCAGCT
ACGGGCTTGGATTACCCTTCTGTCGTAAAGTGATGAAATCTTTTGGCGGGAACATTGCGTGTGCGTCGGTGCTGGGGGAA
TGGACCGAATTTACTCTGAGTTTCCCTCTGTATGAGTCGCAGGAAGTCTCACACATCAAACTGGATCTGATGAAAAATAA
ATCCGTTCTGTATATTGGAACACAGGGATTAATGAGTCGCCATTTAAGTGAGACATCGTTTTATCAGGGATTCCGTCTGC
ACCTTGTGACGTTGCAGGAAGCTCTGGTACGCGAAGAGTATGAATTCGAATATGATGCCATTGTGCTGGATCTCGAACAG
ATTGAAGATCACTGGCAATCGGTGGTCGAACTGGAAAGTAAACTGCACTTTACTGAAGCGCAAATTGTGTACCTGTTTGA
TAAACAGCGGGAATATCCGATCAATATTGAGCGCCATTTACGCGTAACGCCGCTGGACATTCGTCAGATGTTACGGGATA
CGGACAAAGAACTGGACAAGCTGTTCTTTGATGTCGCGGAACTGGTTCAGGATCGCAACGTGATTCCGCAGAAGAAACAG
ACGTATGAACGCCGTATTCTGGTGGTGGATGATAACCAGTCGTTGCGTACCTTCACCGCGTTGATGCTAGAAAAGCAGGG
TTATGAAGTGGTACAGGCAAATGATGGTCAACAGGCGTTGGATGCGGTCGAGAGCAGCGATTTCGATTTGATCCTGATGG
ATATCGAAATGCCGTTTATCGATGGCATAGAAGCAACACGGGTTATTCGTGATTCGGACAAGCCGTACCGCCACATTCCT
ATTGTCGGGCATACGGGCGATAACAGCCCGATGACGATCGAAAAAATTCATAAATCGGGCATGAACGACTACATCGTTAA
ACCCGCTGATAAAGACAAACTACTTGGTAAACTGGCAAACTGGATCTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.004

100

0.591

Multiple sequence alignment