Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY10_RS10760 Genome accession   NZ_CP046767
Coordinates   2296452..2297087 (-) Length   211 a.a.
NCBI ID   WP_325065047.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2013V-1300     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2291452..2302087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY10_RS10730 gspL 2291705..2292916 (+) 1212 WP_020329335.1 type II secretion system protein GspL -
  GPY10_RS10735 - 2292926..2293432 (+) 507 WP_158151644.1 type II secretion system protein M -
  GPY10_RS10740 - 2293432..2294190 (+) 759 WP_055453008.1 type II secretion system protein N -
  GPY10_RS10745 cysQ 2294220..2295047 (-) 828 WP_020429367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY10_RS10750 nudE 2295071..2295618 (-) 548 Protein_2056 ADP compounds hydrolase NudE -
  GPY10_RS10755 nfuA 2295764..2296351 (-) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  GPY10_RS10760 comF 2296452..2297087 (-) 636 WP_325065047.1 phosphoribosyltransferase family protein Machinery gene
  GPY10_RS10765 bioH 2297240..2298010 (+) 771 WP_158151885.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY10_RS10770 - 2298139..2298609 (+) 471 WP_020329343.1 hypothetical protein -
  GPY10_RS10775 - 2298691..2301000 (-) 2310 WP_020429362.1 Tex family protein -
  GPY10_RS10780 - 2301056..2301718 (-) 663 WP_158151645.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23705.28 Da        Isoelectric Point: 8.4385

>NTDB_id=407419 GPY10_RS10760 WP_325065047.1 2296452..2297087(-) (comF) [Vibrio fluvialis strain 2013V-1300]
MPLESHSTQSLCGACLDWYAPTMRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDYRFPLSQSVHQLKYQRQFWQAQP
LAGLLAPRIVSPAPLVACVPLHWCRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRLATPPQQGLNKAQRRRNLNQAFV
LNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 636 bp        

>NTDB_id=407419 GPY10_RS10760 WP_325065047.1 2296452..2297087(-) (comF) [Vibrio fluvialis strain 2013V-1300]
TTGCCCCTTGAATCGCATAGCACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCATGCGCTGCGCTCG
CTGCGGCCTGCCTTGTGAAACCGCTACCGAGCAGTGTGGCCAATGCCTGACATCGCCGCCGCCGTGGCACAAGCTCTATT
GTTTGGGCGATTACCGTTTTCCACTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCG
CTGGCCGGATTGTTAGCACCACGAATAGTATCACCCGCCCCACTGGTAGCCTGCGTGCCGCTGCACTGGTGCCGCCATGC
CTGGCGCGGTTTCAATCAAAGTGATGTTTTGGCACGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGT
TTTCCCGTCGCCTGGCCACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGCCGGCGCAATCTCAACCAAGCTTTTGTC
TTAAACAGTGCGCCGAGCCACAGACACATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATG
CAATTTACTGCTTGATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

65.403

100

0.654
  comF Vibrio campbellii strain DS40M4

52.709

96.209

0.507

Multiple sequence alignment