Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY27_RS14475 Genome accession   NZ_CP046761
Coordinates   2922953..2923678 (+) Length   241 a.a.
NCBI ID   WP_158114051.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM46865     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2917953..2928678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY27_RS14460 - 2919056..2921377 (+) 2322 WP_025588023.1 Tex family protein -
  GPY27_RS14465 - 2921513..2921977 (-) 465 WP_005459035.1 hypothetical protein -
  GPY27_RS14470 bioH 2922101..2922868 (-) 768 WP_199251716.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY27_RS14475 comF 2922953..2923678 (+) 726 WP_158114051.1 phosphoribosyltransferase family protein Machinery gene
  GPY27_RS14480 nfuA 2923776..2924360 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GPY27_RS14485 nudE 2924581..2925150 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  GPY27_RS14490 cysQ 2925192..2926019 (+) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY27_RS14495 - 2926306..2927067 (-) 762 WP_140049938.1 type II secretion system protein N -
  GPY27_RS14500 - 2927069..2927560 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27640.72 Da        Isoelectric Point: 9.0105

>NTDB_id=407338 GPY27_RS14475 WP_158114051.1 2922953..2923678(+) (comF) [Vibrio parahaemolyticus strain AM46865]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDNCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGNKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=407338 GPY27_RS14475 WP_158114051.1 2922953..2923678(+) (comF) [Vibrio parahaemolyticus strain AM46865]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATAACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTAGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGAACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTTGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment