Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HZS99_RS01615 Genome accession   NZ_CP058748
Coordinates   352430..353194 (-) Length   254 a.a.
NCBI ID   WP_001136211.1    Uniprot ID   -
Organism   Escherichia coli strain STLIN_13     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 347430..358194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS99_RS01590 (HZS99_01560) yhhJ 349273..350397 (+) 1125 WP_001314210.1 ABC transporter permease -
  HZS99_RS01595 (HZS99_01565) - 350470..350745 (+) 276 WP_001260301.1 type II toxin-antitoxin system HicA family toxin -
  HZS99_RS01600 (HZS99_01570) - 350742..351101 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  HZS99_RS01605 (HZS99_01575) nikR 351221..351622 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  HZS99_RS01610 (HZS99_01580) nikE 351627..352433 (-) 807 WP_061092823.1 nickel import ATP-binding protein NikE -
  HZS99_RS01615 (HZS99_01585) amiE 352430..353194 (-) 765 WP_001136211.1 nickel import ATP-binding protein NikD Regulator
  HZS99_RS01620 (HZS99_01590) nikC 353194..354027 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  HZS99_RS01625 (HZS99_01595) nikB 354024..354968 (-) 945 WP_000947080.1 nickel ABC transporter permease subunit NikB -
  HZS99_RS01630 (HZS99_01600) nikA 354968..356542 (-) 1575 WP_000493131.1 nickel ABC transporter substrate-binding protein -
  HZS99_RS01635 (HZS99_01605) acpT 356653..357240 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.45 Da        Isoelectric Point: 6.9016

>NTDB_id=407271 HZS99_RS01615 WP_001136211.1 352430..353194(-) (amiE) [Escherichia coli strain STLIN_13]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=407271 HZS99_RS01615 WP_001136211.1 352430..353194(-) (amiE) [Escherichia coli strain STLIN_13]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTTCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCGGATGACGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment