Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY20_RS11175 Genome accession   NZ_CP046756
Coordinates   887278..887979 (-) Length   233 a.a.
NCBI ID   WP_044363313.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882278..892979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS11145 gspL 882530..883741 (+) 1212 WP_158129928.1 type II secretion system protein GspL -
  GPY20_RS11150 - 883751..884257 (+) 507 WP_020329336.1 type II secretion system protein M -
  GPY20_RS11155 - 884257..885015 (+) 759 WP_143682658.1 type II secretion system protein N -
  GPY20_RS11160 cysQ 885045..885872 (-) 828 WP_020429367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY20_RS11165 nudE 885896..886444 (-) 549 WP_047459232.1 ADP compounds hydrolase NudE -
  GPY20_RS11170 nfuA 886590..887177 (-) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  GPY20_RS11175 comF 887278..887979 (-) 702 WP_044363313.1 amidophosphoribosyltransferase Machinery gene
  GPY20_RS11180 bioH 888066..888836 (+) 771 WP_055453006.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY20_RS11185 - 888965..889435 (+) 471 WP_140229734.1 ATP-dependent Lon protease -
  GPY20_RS11190 - 889518..891827 (-) 2310 WP_158129929.1 Tex family protein -
  GPY20_RS11195 - 891883..892545 (-) 663 WP_158129930.1 hypothetical protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26363.40 Da        Isoelectric Point: 8.8535

>NTDB_id=407234 GPY20_RS11175 WP_044363313.1 887278..887979(-) (comF) [Vibrio fluvialis strain 2015AW-0077]
MLTNRLQKTMFSWLRPSCQLCGLPLESHNTQSLCGACLDWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDY
RFPLSQSVHQLKYQRQFWQAQPLAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRL
ATPPQQGLNKAQRRRNLNQAFVLNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=407234 GPY20_RS11175 WP_044363313.1 887278..887979(-) (comF) [Vibrio fluvialis strain 2015AW-0077]
ATGTTAACCAATCGACTTCAAAAAACCATGTTTTCGTGGCTGAGACCGTCGTGTCAGCTGTGCGGTTTGCCCCTTGAATC
GCATAACACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGTTGCGCTCGCTGCGGCCTGCCTT
GTGAAACCGCCACCGAACAGTGTGGCCAATGCCTGACATCGCCGCCGCCGTGGCATAAGCTCTATTGTTTGGGCGATTAC
CGTTTTCCACTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCGCTGGCCGGATTGTT
AGCCCCAAGAATTGTATCGCCCGCCCCTCTGGTGACCTGCGTGCCGCTGCACTGGCGCCGCCATGCCTGGCGCGGTTTCA
ATCAAAGTGATGTTTTGGCACGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGTTTTCCCGTCGCCTG
GCCACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGCCGGCGCAATCTCAACCAAGCTTTTGTCTTAAACAGTGCGCC
GAGCCACAGACACATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATGCAATTTACTGCTTG
ATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.378

100

0.644
  comF Vibrio campbellii strain DS40M4

49.791

100

0.511

Multiple sequence alignment