Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SSU1300283_RS07115 Genome accession   NZ_CP058741
Coordinates   1436093..1436827 (-) Length   244 a.a.
NCBI ID   WP_002938699.1    Uniprot ID   -
Organism   Streptococcus suis strain 13-00283-02     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1431093..1441827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS07085 (SSU1300283_01433) - 1431202..1432029 (-) 828 WP_022540576.1 class C sortase -
  SSU1300283_RS07090 (SSU1300283_01434) - 1431997..1432386 (+) 390 Protein_1391 transposase -
  SSU1300283_RS07095 (SSU1300283_01435) - 1432387..1432773 (-) 387 WP_002938691.1 hypothetical protein -
  SSU1300283_RS07100 (SSU1300283_01436) lepB 1432792..1433394 (-) 603 WP_009909468.1 signal peptidase I -
  SSU1300283_RS07105 (SSU1300283_01437) - 1433384..1433677 (-) 294 WP_002938694.1 hypothetical protein -
  SSU1300283_RS07110 (SSU1300283_01438) - 1435115..1435963 (-) 849 WP_192109813.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  SSU1300283_RS07115 (SSU1300283_01439) amiE 1436093..1436827 (-) 735 WP_002938699.1 amino acid ABC transporter ATP-binding protein Regulator
  SSU1300283_RS07120 (SSU1300283_01440) - 1436820..1437509 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  SSU1300283_RS07125 (SSU1300283_01441) - 1437705..1438994 (+) 1290 WP_014636745.1 IS4-like element ISSsu2 family transposase -
  SSU1300283_RS07130 (SSU1300283_01442) - 1439149..1439379 (-) 231 WP_002938704.1 DUF1797 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26895.13 Da        Isoelectric Point: 4.7252

>NTDB_id=407129 SSU1300283_RS07115 WP_002938699.1 1436093..1436827(-) (amiE) [Streptococcus suis strain 13-00283-02]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGIIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=407129 SSU1300283_RS07115 WP_002938699.1 1436093..1436827(-) (amiE) [Streptococcus suis strain 13-00283-02]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTTGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAACCTTTTTCCAAATATGACGGTATTAGATAACATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CAAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAACGGATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTGCTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCGGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTATCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365