Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPX93_RS19025 Genome accession   NZ_CP046749
Coordinates   2699578..2700438 (+) Length   286 a.a.
NCBI ID   WP_123163110.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1118     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2694578..2705438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS12270 greB 2695106..2695588 (-) 483 WP_001965872.1 transcription elongation factor GreB -
  GPX93_RS12275 - 2695833..2698154 (+) 2322 WP_000030094.1 Tex family protein -
  GPX93_RS12280 - 2698249..2698719 (-) 471 WP_184482936.1 ATP-dependent Lon protease -
  GPX93_RS12285 bioH 2698881..2699642 (-) 762 WP_184483034.1 pimeloyl-ACP methyl ester esterase BioH -
  GPX93_RS19025 comF 2699578..2700438 (+) 861 WP_123163110.1 ComF family protein Machinery gene
  GPX93_RS12295 nfuA 2700526..2701113 (+) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  GPX93_RS12300 nudE 2701252..2701800 (+) 549 WP_000095817.1 ADP compounds hydrolase NudE -
  GPX93_RS12305 cysQ 2701823..2702650 (+) 828 WP_053034350.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPX93_RS12310 - 2702693..2703451 (-) 759 WP_053034351.1 type II secretion system protein N -
  GPX93_RS12315 gspM 2703453..2703950 (-) 498 WP_053034352.1 type II secretion system protein GspM -
  GPX93_RS12320 gspL 2703960..2705171 (-) 1212 WP_053034353.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32557.46 Da        Isoelectric Point: 8.0588

>NTDB_id=407123 GPX93_RS19025 WP_123163110.1 2699578..2700438(+) (comF) [Vibrio cholerae strain 2015V-1118]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSTNWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKQLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=407123 GPX93_RS19025 WP_123163110.1 2699578..2700438(+) (comF) [Vibrio cholerae strain 2015V-1118]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTACCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCAGCTCGCCACCCAG
ATTAACGAGCCAGCCCCTTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTCAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.252

100

0.983
  comF Vibrio campbellii strain DS40M4

46.218

83.217

0.385

Multiple sequence alignment