Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SSU16085_RS05445 Genome accession   NZ_CP058740
Coordinates   1137984..1139726 (+) Length   580 a.a.
NCBI ID   WP_044675557.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1132984..1144726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS05425 (SSU16085_01106) - 1133553..1134371 (+) 819 WP_002935241.1 NAD kinase -
  SSU16085_RS05430 (SSU16085_01107) - 1134371..1135264 (+) 894 WP_043032887.1 RluA family pseudouridine synthase -
  SSU16085_RS05435 (SSU16085_01108) pta 1135282..1136256 (+) 975 WP_002935239.1 phosphate acetyltransferase -
  SSU16085_RS05440 (SSU16085_01109) - 1136258..1137997 (+) 1740 WP_043032888.1 ABC transporter ATP-binding protein -
  SSU16085_RS05445 (SSU16085_01110) rcrQ 1137984..1139726 (+) 1743 WP_044675557.1 ABC transporter ATP-binding protein Regulator
  SSU16085_RS05450 (SSU16085_01111) - 1139710..1140102 (+) 393 WP_029693807.1 PaaI family thioesterase -
  SSU16085_RS05455 (SSU16085_01112) mutY 1140286..1141446 (+) 1161 WP_024381349.1 A/G-specific adenine glycosylase -
  SSU16085_RS05460 (SSU16085_01113) - 1142109..1142909 (-) 801 WP_043032890.1 XRE family transcriptional regulator -
  SSU16085_RS05465 (SSU16085_01114) - 1143040..1143510 (+) 471 WP_024381347.1 hypothetical protein -
  SSU16085_RS05470 (SSU16085_01115) - 1143530..1144072 (+) 543 WP_024381346.1 hypothetical protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64480.54 Da        Isoelectric Point: 5.0031

>NTDB_id=407039 SSU16085_RS05445 WP_044675557.1 1137984..1139726(+) (rcrQ) [Streptococcus suis strain 16085/3b]
MRQSSFKELVRLVLGQPFRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLLGILGKMVMVILLNTLMQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRQSVGDLVARFSSDSEQLSNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LLVVALTPVSLLVARYIAKKSYGYYRQQTQARGKQSQLLEESISQLTLVQSFNDQEQFTQGFQVVNEQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFDNVSFSYSPDRSLIEHLDIDVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIVLDGVSI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=407039 SSU16085_RS05445 WP_044675557.1 1137984..1139726(+) (rcrQ) [Streptococcus suis strain 16085/3b]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTAGGCCAACCCTTTCGAATGTCTTTGATGTTGGTGGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTTGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTGATGGTTATCTTGCTTAATACACTGATGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTACGGAATGGTAGCCGACTTGCGTGAACAGGTTTATGTGAAGCTGCACCAGATGCCCCTATCTTA
TCTGGATCGTCAATCAGTCGGTGATTTGGTGGCTCGTTTTTCAAGTGATAGCGAGCAATTATCAAATGGTCTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGCTGGTTGTGGCATTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGGCA
ACAGACTCAGGCACGTGGGAAGCAATCTCAGCTTTTGGAAGAGTCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
ATCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATGAACAGTATGCGACCTATTCTCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCAAGTACGCGGTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGATCTCTGACAACCTTCCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGGCTGTTTGCTATCTTGGCTCTAGATAGCATTGAT
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGACAATGTGTCTTTCTCTTATAGCCC
TGACCGTTCTCTGATAGAACATCTGGACATTGATGTCAAAGCTGGACAAAAAGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATCAATCTTCTCATGCGTTTCTATGATGTGACGGCTGGTCAGATTGTCTTAGATGGTGTTTCGATT
AGCCAGTACAGTCGTGAGGATCTCCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCCAATGCAGACTTCT
TTATTCGTCAGCTTCCGCAGGGCTACGATACGGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTCAAGATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGTTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.479

100

0.379