Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPW72_RS19870 Genome accession   NZ_CP046744
Coordinates   2425492..2426352 (-) Length   286 a.a.
NCBI ID   WP_001895126.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3569-08     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2420492..2431352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW72_RS16560 gspL 2420750..2421961 (+) 1212 WP_001288749.1 type II secretion system protein GspL -
  GPW72_RS16565 gspM 2421971..2422468 (+) 498 WP_000661343.1 type II secretion system protein GspM -
  GPW72_RS16570 - 2422470..2423228 (+) 759 WP_000817139.1 type II secretion system protein N -
  GPW72_RS16575 cysQ 2423280..2424107 (-) 828 WP_016710965.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPW72_RS16580 nudE 2424130..2424678 (-) 549 WP_000095815.1 ADP compounds hydrolase NudE -
  GPW72_RS16585 nfuA 2424817..2425404 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  GPW72_RS19870 comF 2425492..2426352 (-) 861 WP_001895126.1 ComF family protein Machinery gene
  GPW72_RS16595 bioH 2426288..2427049 (+) 762 WP_001262152.1 pimeloyl-ACP methyl ester esterase BioH -
  GPW72_RS16600 - 2427212..2427682 (+) 471 WP_000961393.1 hypothetical protein -
  GPW72_RS16605 - 2427777..2430098 (-) 2322 WP_001895127.1 Tex family protein -
  GPW72_RS16610 greB 2430343..2430828 (+) 486 WP_000850496.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32493.54 Da        Isoelectric Point: 8.1621

>NTDB_id=407034 GPW72_RS19870 WP_001895126.1 2425492..2426352(-) (comF) [Vibrio cholerae strain 3569-08]
MPQPCTNTRSCPCPLTCQYIAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLAHGYRCARCGLPTLTPVEQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDYQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=407034 GPW72_RS19870 WP_001895126.1 2425492..2426352(-) (comF) [Vibrio cholerae strain 3569-08]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACATCGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGCGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTCACTCC
TGTTGAACAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCTTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACTACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

97.552

100

0.976
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment