Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HYO64_RS00665 Genome accession   NZ_CP058729
Coordinates   138937..140202 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain M164-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 133937..145202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS00635 mutY 134106..135140 (-) 1035 WP_001113863.1 A/G-specific adenine glycosylase -
  HYO64_RS00640 - 135281..135643 (-) 363 WP_000130110.1 HIT family protein -
  HYO64_RS00645 - 135829..136566 (-) 738 WP_000100768.1 dienelactone hydrolase family protein -
  HYO64_RS00650 - 136738..136896 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  HYO64_RS00655 - 137091..137549 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  HYO64_RS00660 - 137659..138831 (+) 1173 WP_213067654.1 PQQ-dependent sugar dehydrogenase -
  HYO64_RS00665 rarA 138937..140202 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  HYO64_RS00670 - 140218..141057 (-) 840 WP_000349492.1 formate/nitrite transporter family protein -
  HYO64_RS00675 - 141343..141546 (-) 204 WP_000418559.1 hypothetical protein -
  HYO64_RS00680 purC 141739..142458 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  HYO64_RS00685 - 142496..143098 (-) 603 WP_001177091.1 hypothetical protein -
  HYO64_RS00690 dapA 143114..144007 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  HYO64_RS00695 pncA 144337..144981 (+) 645 WP_002017318.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=406906 HYO64_RS00665 WP_001285409.1 138937..140202(+) (rarA) [Acinetobacter baumannii strain M164-3]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=406906 HYO64_RS00665 WP_001285409.1 138937..140202(+) (rarA) [Acinetobacter baumannii strain M164-3]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGTGCGACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTAAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGATATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387

Multiple sequence alignment