Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPW74_RS19220 Genome accession   NZ_CP046737
Coordinates   1961295..1962155 (+) Length   286 a.a.
NCBI ID   WP_001905608.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1126     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1956295..1967155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW74_RS08760 greB 1956826..1957308 (-) 483 WP_123012535.1 transcription elongation factor GreB -
  GPW74_RS08765 - 1957551..1959872 (+) 2322 WP_114741399.1 Tex family protein -
  GPW74_RS08770 - 1959967..1960437 (-) 471 WP_000961393.1 hypothetical protein -
  GPW74_RS08775 bioH 1960598..1961359 (-) 762 WP_001240436.1 pimeloyl-ACP methyl ester esterase BioH -
  GPW74_RS19220 comF 1961295..1962155 (+) 861 WP_001905608.1 ComF family protein Machinery gene
  GPW74_RS08785 nfuA 1962243..1962830 (+) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  GPW74_RS08790 nudE 1962969..1963517 (+) 549 WP_123012536.1 ADP compounds hydrolase NudE -
  GPW74_RS08795 cysQ 1963540..1964367 (+) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPW74_RS08800 - 1964419..1965177 (-) 759 WP_000817146.1 type II secretion system protein N -
  GPW74_RS08805 gspM 1965179..1965676 (-) 498 WP_000661339.1 type II secretion system protein GspM -
  GPW74_RS08810 gspL 1965686..1966897 (-) 1212 WP_184478540.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32559.49 Da        Isoelectric Point: 8.0588

>NTDB_id=406887 GPW74_RS19220 WP_001905608.1 1961295..1962155(+) (comF) [Vibrio cholerae strain 2015V-1126]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCIGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANMLNVEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=406887 GPW74_RS19220 WP_001905608.1 1961295..1962155(+) (comF) [Vibrio cholerae strain 2015V-1126]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTATCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCGTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATATGCTGAACGTTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

99.65

100

0.997
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment