Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPW66_RS19410 Genome accession   NZ_CP046736
Coordinates   775170..776030 (-) Length   286 a.a.
NCBI ID   WP_001887331.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3528-08     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 770170..781030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW66_RS08405 gspL 770428..771639 (+) 1212 WP_032473018.1 type II secretion system protein GspL -
  GPW66_RS08410 gspM 771649..772146 (+) 498 WP_032473017.1 type II secretion system protein GspM -
  GPW66_RS08415 - 772148..772906 (+) 759 WP_001887338.1 type II secretion system protein N -
  GPW66_RS08420 cysQ 772958..773785 (-) 828 WP_019829131.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPW66_RS08425 nudE 773808..774356 (-) 549 WP_000095817.1 ADP compounds hydrolase NudE -
  GPW66_RS08430 nfuA 774495..775082 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  GPW66_RS19410 comF 775170..776030 (-) 861 WP_001887331.1 ComF family protein Machinery gene
  GPW66_RS08440 bioH 775960..776727 (+) 768 WP_162833728.1 pimeloyl-ACP methyl ester esterase BioH -
  GPW66_RS08445 - 776890..777360 (+) 471 WP_000961393.1 hypothetical protein -
  GPW66_RS08450 - 777455..779776 (-) 2322 WP_001887329.1 Tex family protein -
  GPW66_RS08455 greB 780021..780503 (+) 483 WP_001965872.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32557.46 Da        Isoelectric Point: 8.0588

>NTDB_id=406848 GPW66_RS19410 WP_001887331.1 775170..776030(-) (comF) [Vibrio cholerae strain 3528-08]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLSQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=406848 GPW66_RS19410 WP_001887331.1 775170..776030(-) (comF) [Vibrio cholerae strain 3528-08]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCT
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGACCAGTGCGGACAGTGTTTGAGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.951

100

0.99
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment