Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SSU12_RS01770 Genome accession   NC_017619
Coordinates   340125..340913 (+) Length   262 a.a.
NCBI ID   WP_011921926.1    Uniprot ID   A0A0H3MTH0
Organism   Streptococcus suis SS12     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 335125..345913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU12_RS01745 (SSU12_0322) - 335485..336444 (-) 960 WP_011922637.1 asparaginase -
  SSU12_RS11085 - 336514..337879 (+) 1366 Protein_300 Cof-type HAD-IIB family hydrolase -
  SSU12_RS01760 (SSU12_0325) - 337895..338347 (-) 453 WP_004195772.1 universal stress protein -
  SSU12_RS01765 (SSU12_0326) - 338502..339716 (+) 1215 WP_011921925.1 pyridoxal phosphate-dependent aminotransferase -
  SSU12_RS01770 (SSU12_0327) codY 340125..340913 (+) 789 WP_011921926.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SSU12_RS01775 (SSU12_0328) - 340926..341456 (+) 531 WP_029693245.1 cysteine hydrolase family protein -
  SSU12_RS01780 (SSU12_0329) rplS 341710..342057 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  SSU12_RS01785 (SSU12_0330) - 342218..342892 (+) 675 WP_012774968.1 hydrolase -
  SSU12_RS01790 (SSU12_0331) gatC 343109..343411 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SSU12_RS01795 (SSU12_0332) gatA 343411..344877 (+) 1467 WP_011921931.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29307.34 Da        Isoelectric Point: 4.6190

>NTDB_id=40661 SSU12_RS01770 WP_011921926.1 340125..340913(+) (codY) [Streptococcus suis SS12]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=40661 SSU12_RS01770 WP_011921926.1 340125..340913(+) (codY) [Streptococcus suis SS12]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTACGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGATCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MTH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.439

93.893

0.492

Multiple sequence alignment