Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   HYQ63_RS15775 Genome accession   NZ_CP058693
Coordinates   3837903..3840110 (-) Length   735 a.a.
NCBI ID   WP_179934391.1    Uniprot ID   -
Organism   Streptomyces sp. Rer75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3832903..3845110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYQ63_RS15760 (HYQ63_15760) - 3833525..3833746 (+) 222 WP_179934388.1 heavy-metal-associated domain-containing protein -
  HYQ63_RS15765 (HYQ63_15765) - 3833743..3836031 (+) 2289 WP_179934389.1 cation-translocating P-type ATPase -
  HYQ63_RS15770 (HYQ63_15770) - 3836427..3837716 (-) 1290 WP_179934390.1 citrate synthase -
  HYQ63_RS15775 (HYQ63_15775) recD/recD2/recDB 3837903..3840110 (-) 2208 WP_179934391.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HYQ63_RS15780 (HYQ63_15780) - 3840331..3841347 (+) 1017 WP_179934392.1 LacI family DNA-binding transcriptional regulator -
  HYQ63_RS15785 (HYQ63_15785) - 3841437..3842996 (+) 1560 WP_179940156.1 sugar ABC transporter ATP-binding protein -
  HYQ63_RS15790 (HYQ63_15790) - 3842986..3844935 (+) 1950 WP_179934393.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79048.34 Da        Isoelectric Point: 6.5203

>NTDB_id=406514 HYQ63_RS15775 WP_179934391.1 3837903..3840110(-) (recD/recD2/recDB) [Streptomyces sp. Rer75]
MLKLAVVEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYQTVLPA
TVQGIRRYLGSGLIKGIGPRIADRITEHFGIDTLDVIEEQPKRLIEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASIAIVKNEPYRLAADVWGIGFLTADKIAQSVGIPHDSPDRVKAGLQYALSQSADQGHCYLPEEQL
IGDAVKLLQVDTGLVIDCLGELAAEDEGVVREPVPGPEGGEPVSAVYLVPFHRAEISLAGQVRRLLRTEEDRLPAFQGVD
WGAALGWLAKRTGADLAPEQSQAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLAELTGA
EASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRDLLAD
GSPVPAVRLTRIFRQAQQSGVVTNAHRINSGAPPITQGLSDFFLFVEDDTEEAGRLTVDVAARRVPAKFGLDPRRDVQVL
APMHRGPAGAGTLNGLLQQAITPARPDLPERRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTSLDSDEQRLTVLT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQAVRTVS
AGRRCTALDHRLGGT

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=406514 HYQ63_RS15775 WP_179934391.1 3837903..3840110(-) (recD/recD2/recDB) [Streptomyces sp. Rer75]
ATGCTCAAACTCGCGGTGGTCGAAGGGGTTCTGGAACGGATCACCTACGCCAATGAGGAGAACGGGTACACGGTCGCCCG
GGTCGACACCGGCCGCGGCTCGGGCGATCTGCTGACCGTCGTCGGCTCGCTGCTGGGCGCGCAGCCGGGGGAGTCGCTGC
GGATGGAGGGCCGCTGGGGTTCCCATCCGCAATATGGCAAACAGTTCACCGTCGAGAATTACCAGACCGTCCTGCCCGCC
ACCGTCCAGGGCATCCGGCGCTATCTCGGCTCGGGCCTCATCAAGGGCATCGGCCCGCGGATCGCCGACCGGATCACCGA
GCACTTCGGCATCGACACCCTCGATGTCATCGAGGAGCAGCCGAAGCGGCTGATCGAGGTCCCCGGTCTCGGCCCCAAGC
GGACCAAGATGATCGCCGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTGATGGTCTTTCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGTGACGCGTCGATCGCGATAGTGAAGAACGAGCCGTATCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAATCGGTCGGCATCCCGCACGACAGCCCCG
ACCGGGTCAAGGCCGGTTTGCAGTACGCGCTGTCCCAGTCCGCCGACCAGGGCCACTGCTATCTCCCCGAGGAGCAACTG
ATCGGCGATGCGGTGAAGTTGCTCCAGGTCGACACGGGCCTGGTCATCGACTGCCTGGGCGAGTTGGCGGCCGAGGACGA
GGGCGTGGTGCGCGAGCCGGTGCCGGGCCCGGAGGGCGGCGAGCCGGTCTCGGCGGTCTATCTGGTGCCCTTCCACCGCG
CCGAGATCTCGCTGGCCGGGCAGGTGCGGCGGCTGCTGCGCACCGAGGAGGACCGGCTGCCCGCCTTCCAGGGCGTGGAC
TGGGGCGCGGCGCTGGGCTGGCTCGCGAAGCGCACCGGCGCCGACCTGGCTCCCGAGCAGAGTCAGGCGGTGCGGCTCGC
GCTCACCGAGAAGGTCGCGGTGCTCACCGGCGGCCCCGGCTGCGGCAAGTCGTTCACCGTGCGGTCCGTGGTGGAGCTGG
CCCGCGCCAAGAAGGCCAAGGTGGTGCTCGCGGCCCCCACCGGCCGGGCCGCCAAGCGGCTCGCCGAGCTGACCGGGGCC
GAGGCGTCCACGGTGCACCGGCTGCTGGAGCTGAAGCCCGGCGGGGACGCGGCGTACGACAAGGACCGCCCGCTCGACGC
CGACCTGGTGGTCGTCGACGAGGCCTCGATGCTCGATCTGCTGCTGGCCAACAAGCTGGTCAAGGCGGTTCCGCCGGGCG
CCCATCTGCTGTTCGTGGGGGATGTGGACCAGCTGCCGAGCGTCGGCGCCGGGGAGGTGCTGCGCGATCTGCTGGCCGAC
GGCAGCCCGGTGCCCGCCGTCCGGCTGACCCGGATCTTCCGCCAGGCGCAGCAGTCCGGGGTGGTCACCAACGCCCACCG
GATCAATTCCGGGGCCCCGCCGATCACCCAGGGGCTGTCGGACTTCTTCCTCTTCGTGGAGGACGACACGGAGGAGGCCG
GGCGGCTCACGGTGGACGTCGCGGCCCGCCGCGTGCCCGCCAAGTTCGGCCTCGATCCCCGCCGTGACGTGCAGGTCCTC
GCCCCGATGCATCGCGGCCCGGCGGGCGCGGGCACGCTCAACGGACTGTTGCAGCAGGCCATCACCCCGGCCCGGCCGGA
CCTCCCGGAGCGGCGTTTCGGCGGCCGGGTCTTCCGTGTCGGCGACAAGGTGACGCAGATCCGCAACAATTATGAGAAAG
GGGCCAACGGGGTCTTCAACGGCACGGTTGGAGTCGTCACCTCCCTCGACAGCGACGAGCAGCGGCTGACCGTGCTGACG
GACGAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTGGACGAATTGGCTCACGCCTATGCGGTGACCATCCACCGCTC
CCAGGGCAGTGAGTACCCGGCCGTCGTGATCCCGGTGACCACCGGGGCCTGGATGATGTTGCAGCGGAACCTGCTGTACA
CGGCGGTGACCCGGGCCAAGCGCCTTGTGGTGCTGGTCGGCTCGCGCCGCGCGCTCGGGCAGGCGGTGCGTACCGTCTCG
GCGGGCAGACGCTGTACGGCGCTGGATCACCGGCTCGGCGGGACATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(336-514)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix domain (HHH_5)

(94-143)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.117

100

0.366