Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GPA07_RS11730 Genome accession   NZ_CP046653
Coordinates   2249331..2250110 (-) Length   259 a.a.
NCBI ID   WP_008354497.1    Uniprot ID   A0AAC9IF08
Organism   Bacillus sp. ms-22     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2244331..2255110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS11700 (GPA07_11700) fliH 2244438..2245202 (-) 765 WP_071167622.1 flagellar assembly protein FliH -
  GPA07_RS11705 (GPA07_11705) fliG 2245195..2246215 (-) 1021 Protein_2292 flagellar motor switch protein FliG -
  GPA07_RS11710 (GPA07_11710) fliF 2246227..2247822 (-) 1596 WP_157292564.1 flagellar basal-body MS-ring/collar protein FliF -
  GPA07_RS11715 (GPA07_11715) fliE 2247873..2248190 (-) 318 WP_008354494.1 flagellar hook-basal body complex protein FliE -
  GPA07_RS11720 (GPA07_11720) flgC 2248202..2248654 (-) 453 WP_008354495.1 flagellar basal body rod protein FlgC -
  GPA07_RS11725 (GPA07_11725) flgB 2248654..2249043 (-) 390 WP_008354496.1 flagellar basal body rod protein FlgB -
  GPA07_RS11730 (GPA07_11730) codY 2249331..2250110 (-) 780 WP_008354497.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GPA07_RS11735 (GPA07_11735) hslU 2250145..2251545 (-) 1401 WP_008354498.1 HslU--HslV peptidase ATPase subunit -
  GPA07_RS11740 (GPA07_11740) hslV 2251562..2252107 (-) 546 WP_008354499.1 ATP-dependent protease subunit HslV -
  GPA07_RS11745 (GPA07_11745) xerC 2252122..2253039 (-) 918 WP_008354500.1 tyrosine recombinase XerC -
  GPA07_RS11750 (GPA07_11750) trmFO 2253102..2254406 (-) 1305 WP_008354501.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29031.28 Da        Isoelectric Point: 4.7176

>NTDB_id=406434 GPA07_RS11730 WP_008354497.1 2249331..2250110(-) (codY) [Bacillus sp. ms-22]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDRFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=406434 GPA07_RS11730 WP_008354497.1 2249331..2250110(-) (codY) [Bacillus sp. ms-22]
ATGGCGTTATTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAAGAAAT
GGCAGAAACACTTAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTATTCCATCA
ACCAGCAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAAAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGACATCAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACAATTGTTCCAATCATCGGAGGCGGAGATCGCTTAGGGACGTTAATCTTGTCTCGTTTGCAAGATA
GATTTACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCGATCAGTTCTCTTTCCTATAGTGAGCTTGAAGCAAT
TGAGCACATCTTCGAAGAACTTGATGGAAACGAAGGACTGCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGCATCACTC
GTTCAGTCATCGTAAACGCCTTGCGTAAGTTAGAAAGTGCAGGCGTAATTGAATCTCGTTCTCTTGGAATGAAGGGCACG
TACATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment