Detailed information NTG0406423

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HZT35_RS05200
• Genome accession: NZ_CP058682
• Coordinates: 1079303..1080295 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MBT-5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1074303..1085295

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZT35_RS05170 (HZT35_23015)	ispD	1074364..1075074 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HZT35_RS05175 (HZT35_23020)	ispF	1075074..1075553 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HZT35_RS05180 (HZT35_23025)	truD	1075550..1076599 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
HZT35_RS05185 (HZT35_23030)	surE	1076580..1077341 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HZT35_RS05190 (HZT35_23035)	pcm	1077335..1077961 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HZT35_RS05195 (HZT35_23040)	nlpD	1078146..1079240 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HZT35_RS05200 (HZT35_23045)	rpoS	1079303..1080295 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HZT35_RS05205 (HZT35_23050)	-	1080416..1080823 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
HZT35_RS05210 (HZT35_23055)	-	1080970..1081563 (+)	594	WP_182111022.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HZT35_RS05215 (HZT35_23060)	-	1081563..1082990 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HZT35_RS05220 (HZT35_23065)	-	1083001..1083237 (+)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HZT35_RS05225 (HZT35_23070)	ygbN	1083276..1084640 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=406423 HZT35_RS05200 WP_000081550.1 1079303..1080295(+) (rpoS) [Escherichia coli strain MBT-5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=406423 HZT35_RS05200 WP_000081550.1 1079303..1080295(+) (rpoS) [Escherichia coli strain MBT-5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715