Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   S9968_RS04510 Genome accession   NZ_CP058666
Coordinates   811235..812503 (-) Length   422 a.a.
NCBI ID   WP_000774760.1    Uniprot ID   Q8DX76
Organism   Streptococcus agalactiae strain S9968     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 806235..817503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S9968_RS04460 - 806882..807079 (-) 198 WP_000208122.1 helix-turn-helix transcriptional regulator -
  S9968_RS04465 (S9968_100893) - 807076..807216 (-) 141 WP_017645165.1 hypothetical protein -
  S9968_RS04470 (S9968_100894) - 807213..807902 (-) 690 WP_000884780.1 hypothetical protein -
  S9968_RS04475 (S9968_100895) - 807896..808930 (-) 1035 WP_000822469.1 replication initiator protein A -
  S9968_RS04480 (S9968_100896) - 808932..809096 (-) 165 WP_000166480.1 hypothetical protein -
  S9968_RS04485 - 809203..809681 (-) 479 Protein_804 hypothetical protein -
  S9968_RS04490 (S9968_100899) - 809748..810101 (-) 354 WP_001097378.1 helix-turn-helix domain-containing protein -
  S9968_RS04495 (S9968_100901) - 810269..810526 (-) 258 WP_000191926.1 DUF3850 domain-containing protein -
  S9968_RS04500 (S9968_100902) - 810523..810699 (-) 177 WP_000842163.1 hypothetical protein -
  S9968_RS04505 (S9968_100903) - 810710..811081 (-) 372 WP_001282472.1 hypothetical protein -
  S9968_RS04510 (S9968_100904) rarA 811235..812503 (-) 1269 WP_000774760.1 replication-associated recombination protein A Machinery gene
  S9968_RS04515 (S9968_100905) - 812496..812987 (-) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  S9968_RS04520 (S9968_100906) - 813314..813784 (+) 471 WP_001051348.1 DUF3013 family protein -
  S9968_RS04525 (S9968_100907) - 813920..814378 (+) 459 WP_000350744.1 NUDIX hydrolase -
  S9968_RS04530 (S9968_100908) - 814350..814820 (+) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  S9968_RS04535 (S9968_100909) - 814859..815575 (-) 717 WP_000859573.1 MerR family transcriptional regulator -
  S9968_RS04540 (S9968_100910) - 815792..816157 (+) 366 WP_228775695.1 MepB family protein -
  S9968_RS04545 (S9968_100911) prmA 816154..817107 (+) 954 WP_001099294.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46572.99 Da        Isoelectric Point: 6.3530

>NTDB_id=406348 S9968_RS04510 WP_000774760.1 811235..812503(-) (rarA) [Streptococcus agalactiae strain S9968]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQCSYITMDKNGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=406348 S9968_RS04510 WP_000774760.1 811235..812503(-) (rarA) [Streptococcus agalactiae strain S9968]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTCTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTTATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGTGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATATCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCCGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCTTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTACTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DX76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588