Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   GPA00_RS06360 Genome accession   NZ_CP046629
Coordinates   1266682..1267545 (+) Length   287 a.a.
NCBI ID   WP_157327923.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1261682..1272545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS06330 (GPA00_06330) - 1261900..1262775 (+) 876 WP_004231084.1 F0F1 ATP synthase subunit gamma -
  GPA00_RS06335 (GPA00_06335) atpD 1262841..1264247 (+) 1407 WP_024344335.1 F0F1 ATP synthase subunit beta -
  GPA00_RS06340 (GPA00_06340) - 1264260..1264676 (+) 417 WP_021142000.1 F0F1 ATP synthase subunit epsilon -
  GPA00_RS06345 (GPA00_06345) - 1264818..1265054 (+) 237 WP_157327921.1 DUF1146 family protein -
  GPA00_RS06350 (GPA00_06350) murA 1265117..1266391 (+) 1275 WP_027967998.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GPA00_RS06355 (GPA00_06355) - 1266394..1266582 (+) 189 WP_024344337.1 DNA-directed RNA polymerase subunit beta -
  GPA00_RS06360 (GPA00_06360) endA 1266682..1267545 (+) 864 WP_157327923.1 DNA/RNA non-specific endonuclease Machinery gene
  GPA00_RS06365 (GPA00_06365) pheS 1267834..1268877 (+) 1044 WP_027967999.1 phenylalanine--tRNA ligase subunit alpha -
  GPA00_RS06370 (GPA00_06370) - 1268909..1269433 (+) 525 WP_021142007.1 GNAT family N-acetyltransferase -
  GPA00_RS06375 (GPA00_06375) pheT 1269503..1271908 (+) 2406 WP_024344340.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 30547.62 Da        Isoelectric Point: 6.9908

>NTDB_id=406317 GPA00_RS06360 WP_157327923.1 1266682..1267545(+) (endA) [Streptococcus equinus strain CNU G6]
MAKKSNLSKKTKSIISLLVLLVGIGTGWVTTSDSSDPVSQVLSFVTGESSSVTSNHSSANESAPSQELAESVLTDSVKAQ
LGSTIEWNGAGAYLVNGNKTSLNAKVASKPYADNKTKVVQGQSVPTVANALLSKSTRQYQSREETGNGSTSWTPAGWHQV
QNLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEARSEDSTGQNYYEGLVRRALDQNKRVRYRVTLI
YDGDNILASGTHLEAKSSDGSLEFNVFVPNVQSGLTIDYYSGQVSVN

Nucleotide


Download         Length: 864 bp        

>NTDB_id=406317 GPA00_RS06360 WP_157327923.1 1266682..1267545(+) (endA) [Streptococcus equinus strain CNU G6]
ATGGCAAAAAAATCAAATCTGTCTAAAAAGACAAAATCAATTATCTCTTTACTGGTTTTATTAGTTGGTATTGGAACAGG
GTGGGTAACGACATCTGATTCTAGTGACCCAGTCAGTCAAGTTTTATCCTTTGTTACGGGAGAATCATCATCGGTTACTT
CAAATCATTCAAGTGCTAATGAATCAGCACCAAGTCAAGAATTGGCTGAGTCAGTTTTAACTGATAGTGTTAAAGCACAG
TTAGGCTCAACTATTGAATGGAATGGAGCAGGGGCTTATCTTGTAAATGGAAATAAAACCTCTTTGAATGCAAAGGTTGC
AAGCAAACCTTATGCCGATAATAAGACGAAAGTTGTACAAGGACAGTCAGTTCCGACAGTTGCTAACGCACTTTTGAGTA
AGTCAACCCGTCAATACCAAAGCCGTGAGGAAACAGGTAATGGCTCAACCTCTTGGACGCCAGCTGGTTGGCATCAAGTA
CAAAATCTATCTGGAACTTATAGTCATGCGGTTGATCGTGGGCATTTGCTCGGATACGCTTTGGTTGGTGGGCTAAAAGG
TTTTGATGCCTCAACAAGTAATCCTGAAAATGTTGCTACTCAAACAGCTTGGGCAAATGAGGCTAGATCAGAAGATTCAA
CAGGACAGAATTACTATGAAGGGCTTGTCCGTCGAGCACTTGATCAGAATAAACGCGTTCGTTATCGTGTGACTTTGATT
TATGATGGGGACAATATTTTAGCTAGTGGAACACATTTAGAAGCAAAATCATCTGACGGCAGCTTAGAGTTTAATGTCTT
TGTTCCAAATGTTCAAAGTGGACTTACGATTGACTATTATTCTGGTCAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

72.444

78.397

0.568
  endA Streptococcus pneumoniae D39

72.444

78.397

0.568
  endA Streptococcus pneumoniae R6

72.444

78.397

0.568
  endA Streptococcus pneumoniae TIGR4

72.444

78.397

0.568

Multiple sequence alignment