Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GPA00_RS04765 Genome accession   NZ_CP046629
Coordinates   942234..943166 (+) Length   310 a.a.
NCBI ID   WP_003067560.1    Uniprot ID   A0A1G9P2J7
Organism   Streptococcus equinus strain CNU G6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 937234..948166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS04745 (GPA00_04745) - 937455..939107 (+) 1653 WP_027968240.1 peptide ABC transporter substrate-binding protein -
  GPA00_RS04750 (GPA00_04750) - 939219..940133 (+) 915 WP_021141673.1 ABC transporter permease -
  GPA00_RS04755 (GPA00_04755) - 940145..941176 (+) 1032 WP_039697643.1 ABC transporter permease -
  GPA00_RS04760 (GPA00_04760) oppD 941188..942234 (+) 1047 WP_024344767.1 ABC transporter ATP-binding protein Regulator
  GPA00_RS04765 (GPA00_04765) amiF 942234..943166 (+) 933 WP_003067560.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35035.81 Da        Isoelectric Point: 5.6591

>NTDB_id=406303 GPA00_RS04765 WP_003067560.1 942234..943166(+) (amiF) [Streptococcus equinus strain CNU G6]
MTENRKKLVELKNVSLTFNEGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINGGEIDFDGETVSNL
KGKELHEFRKNVQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDEKVQELLSLVGLNKDHMTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQRERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERGRVHQVYDPTAELDGQEREMREITPGHFVLSTEAEAEEYKKALQ

Nucleotide


Download         Length: 933 bp        

>NTDB_id=406303 GPA00_RS04765 WP_003067560.1 942234..943166(+) (amiF) [Streptococcus equinus strain CNU G6]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCTTTGACCTTCAACGAAGGTAAAAAGAACGAAGTAAA
AGCAATCAACAACGTTAGCTTTGACATCTACGAAGGTGAAGTATTTGGTCTAGTTGGTGAATCAGGTTCTGGTAAAACAA
CTGTTGGACGTGCTATCTTGAAACTTTATGATATCAATGGTGGAGAAATTGATTTTGATGGTGAAACAGTTTCTAACCTT
AAAGGTAAAGAATTGCACGAATTCCGTAAAAATGTCCAAATGATTTTCCAAGACCCTCAAGCAAGTCTTAATGGTCGTAT
GAAAATTCGTGACATTGTTGCAGAAGGTCTTGATATTCATAAATTAGTTAATAGTAAAGAAGAACGTGATGAAAAAGTTC
AAGAATTACTATCATTAGTTGGTTTGAACAAAGATCACATGACTCGTTACCCACATGAATTTTCAGGTGGTCAACGTCAA
CGTATCGGTATTGCTCGAGCACTTGCGGTCCAACCAAAATTTATCATTGCTGATGAACCAATTTCAGCCCTTGACGTATC
AATCCAAGCTCAAGTTGTAAACTTGATGCAAAAACTTCAACGTGAACGTGGTTTAACATACTTGTTCATCGCTCACGATT
TGTCTATGGTGAAATACATTTCTGACCGTATCGGTGTTATGCACTGGGGTAAAATGCTTGAAATTGGGACATCTGATGAT
GTTTATAATAATCCAATCCACCCATATACTAAGAGTCTGTTATCTGCTATTCCAGAACCAGATCCAGAATCTGAACGTGG
ACGTGTACACCAAGTGTATGATCCTACTGCAGAGCTTGATGGCCAAGAACGTGAAATGCGAGAAATTACTCCAGGACACT
TTGTACTTTCAACAGAAGCAGAAGCAGAAGAATACAAAAAAGCATTACAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G9P2J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.25

98.065

0.552
  amiF Streptococcus thermophilus LMG 18311

55.921

98.065

0.548
  amiF Streptococcus salivarius strain HSISS4

55.592

98.065

0.545

Multiple sequence alignment