Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   GO596_RS09105 Genome accession   NZ_CP046628
Coordinates   1843564..1844427 (-) Length   287 a.a.
NCBI ID   WP_157339665.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1838564..1849427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS09090 (GO596_09090) pheT 1839201..1841606 (-) 2406 WP_157339663.1 phenylalanine--tRNA ligase subunit beta -
  GO596_RS09095 (GO596_09095) - 1841676..1842200 (-) 525 WP_157339664.1 GNAT family N-acetyltransferase -
  GO596_RS09100 (GO596_09100) pheS 1842232..1843275 (-) 1044 WP_027967999.1 phenylalanine--tRNA ligase subunit alpha -
  GO596_RS09105 (GO596_09105) endA 1843564..1844427 (-) 864 WP_157339665.1 DNA/RNA non-specific endonuclease Machinery gene
  GO596_RS09110 (GO596_09110) - 1844527..1844715 (-) 189 WP_024344337.1 DNA-directed RNA polymerase subunit beta -
  GO596_RS09115 (GO596_09115) murA 1844718..1845992 (-) 1275 WP_021142002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GO596_RS09120 (GO596_09120) - 1846055..1846291 (-) 237 WP_021142001.1 DUF1146 family protein -
  GO596_RS09125 (GO596_09125) - 1846433..1846849 (-) 417 WP_021142000.1 F0F1 ATP synthase subunit epsilon -
  GO596_RS09130 (GO596_09130) atpD 1846862..1848268 (-) 1407 WP_024344335.1 F0F1 ATP synthase subunit beta -
  GO596_RS09135 (GO596_09135) - 1848334..1849209 (-) 876 WP_004231084.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 30581.73 Da        Isoelectric Point: 8.2963

>NTDB_id=406261 GO596_RS09105 WP_157339665.1 1843564..1844427(-) (endA) [Streptococcus equinus strain CNU 77-23]
MAKKSNLSKKTKSIISLLILLVGIGTGWVTTSDSSDPVSQVLSLVTGESSSVTSNHSSANESAPSQELAESVLTDNVKAQ
LGSTIEWNGAGAYLVNGNKTSLNAKVASKPYANNKTKVVQGQSVPTVANALLSKSTRQYRSREETGNGSTSWTPAGWHQV
QNLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEARSEDSTGQNYYEGLVRRALDQNKRVRYRVTLI
YDGDNILASGTHLEAKSSDGSLEFNVFVPNVQSGLTIDYYSGQVSVN

Nucleotide


Download         Length: 864 bp        

>NTDB_id=406261 GO596_RS09105 WP_157339665.1 1843564..1844427(-) (endA) [Streptococcus equinus strain CNU 77-23]
ATGGCAAAAAAATCAAATCTGTCTAAAAAGACAAAATCAATTATCTCTTTACTGATTTTATTAGTTGGTATCGGTACAGG
GTGGGTAACGACATCTGATTCTAGTGACCCAGTCAGTCAAGTTTTATCCCTTGTTACGGGAGAATCATCATCGGTTACTT
CAAATCATTCAAGTGCTAATGAATCAGCACCAAGTCAGGAATTGGCTGAGTCAGTTTTAACTGATAATGTTAAAGCACAG
TTGGGCTCAACTATTGAATGGAATGGAGCAGGGGCTTATCTTGTAAATGGAAATAAAACCTCTTTGAATGCAAAGGTTGC
AAGCAAACCTTATGCCAATAATAAGACGAAAGTTGTACAAGGACAGTCAGTTCCAACAGTTGCTAACGCACTTTTGAGTA
AGTCAACCCGTCAATACCGAAGCCGTGAGGAAACAGGTAATGGCTCAACCTCTTGGACGCCAGCAGGTTGGCATCAAGTA
CAAAATCTATCTGGAACTTATAGCCATGCGGTTGATCGTGGGCATTTGCTTGGATACGCTTTAGTTGGTGGGCTAAAAGG
TTTTGATGCCTCAACAAGTAACCCTGAAAATGTTGCTACTCAGACAGCTTGGGCAAATGAGGCTAGATCAGAAGATTCAA
CAGGACAGAATTACTATGAAGGGCTTGTCCGTCGAGCACTTGATCAGAATAAACGCGTTCGTTATCGTGTGACTTTGATT
TATGATGGGGACAATATTTTAGCTAGTGGAACACATTTAGAAGCAAAATCATCTGACGGCAGCTTAGAGTTTAATGTCTT
TGTTCCAAATGTTCAAAGTGGACTTACGATTGACTATTATTCTGGTCAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

72

78.397

0.564
  endA Streptococcus pneumoniae D39

72

78.397

0.564
  endA Streptococcus pneumoniae R6

72

78.397

0.564
  endA Streptococcus pneumoniae TIGR4

72

78.397

0.564

Multiple sequence alignment