Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   GO995_RS03540 Genome accession   NZ_CP046624
Coordinates   676569..677435 (+) Length   288 a.a.
NCBI ID   WP_157628863.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 671569..682435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS03510 (GO995_03510) - 671803..672678 (+) 876 WP_020916491.1 F0F1 ATP synthase subunit gamma -
  GO995_RS03515 (GO995_03515) atpD 672746..674152 (+) 1407 WP_039697146.1 F0F1 ATP synthase subunit beta -
  GO995_RS03520 (GO995_03520) - 674165..674581 (+) 417 WP_004231089.1 F0F1 ATP synthase subunit epsilon -
  GO995_RS03525 (GO995_03525) - 674700..674936 (+) 237 WP_004231090.1 DUF1146 family protein -
  GO995_RS03530 (GO995_03530) murA 674998..676272 (+) 1275 WP_074563389.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GO995_RS03535 (GO995_03535) - 676276..676464 (+) 189 WP_020916495.1 DNA-directed RNA polymerase subunit beta -
  GO995_RS03540 (GO995_03540) endA 676569..677435 (+) 867 WP_157628863.1 DNA/RNA non-specific endonuclease Machinery gene
  GO995_RS03545 (GO995_03545) pheS 677727..678770 (+) 1044 WP_157628864.1 phenylalanine--tRNA ligase subunit alpha -
  GO995_RS03550 (GO995_03550) - 678803..679327 (+) 525 WP_157628865.1 GNAT family N-acetyltransferase -
  GO995_RS03555 (GO995_03555) pheT 679397..681802 (+) 2406 WP_157628866.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30848.97 Da        Isoelectric Point: 7.3916

>NTDB_id=406165 GO995_RS03540 WP_157628863.1 676569..677435(+) (endA) [Streptococcus ruminicola strain CNU_G3]
MAKKSKLSKQTKSFISLLVLLVSIGAGWLTTSDSSDPVNQVISLITGESSAQIVSNQSSANQATPSQELADSVLTDSVKA
QLGSNLEWNGAGAYLVNGNKTDLNARVASKPYANNKTKIVQGQTIPTVANALLSKSTRQYRSREETGNGSTSWTPAGWHQ
VQNLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEASSEDSTGQNYYEGQVRRALDQNKRVRYRVTL
IYDGDNILASGTHLEAKSSDGSLEFNVFIPNVQSGLSFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=406165 GO995_RS03540 WP_157628863.1 676569..677435(+) (endA) [Streptococcus ruminicola strain CNU_G3]
ATGGCAAAGAAATCAAAACTGTCTAAACAGACAAAATCATTTATTTCTTTATTAGTTTTATTGGTCAGTATTGGTGCGGG
TTGGCTGACAACTTCAGATTCAAGTGATCCTGTTAATCAAGTTATTTCCTTGATTACGGGAGAATCATCTGCACAGATTG
TGTCAAATCAGTCTTCTGCTAATCAAGCAACACCAAGTCAAGAATTAGCAGACTCAGTCTTAACAGACAGCGTTAAAGCT
CAGCTTGGTTCAAATTTAGAATGGAACGGTGCGGGAGCTTATCTGGTTAACGGAAATAAAACCGATTTGAATGCAAGAGT
AGCCAGCAAACCTTATGCCAATAACAAAACAAAAATTGTGCAAGGTCAGACTATTCCAACGGTCGCAAATGCTTTGTTGA
GTAAGTCGACACGTCAATATAGAAGCCGTGAGGAAACTGGAAATGGCTCAACTTCATGGACACCAGCGGGCTGGCACCAA
GTGCAAAATCTTTCTGGAACATACAGTCACGCCGTGGACCGTGGGCACTTGCTCGGCTATGCTTTAGTTGGTGGCTTAAA
AGGCTTTGATGCTTCAACAAGCAATCCTGAAAATGTAGCCACTCAGACAGCCTGGGCAAATGAAGCTAGTTCAGAAGACT
CAACGGGTCAAAATTACTACGAAGGTCAGGTCAGAAGAGCACTTGATCAGAATAAACGTGTTCGTTACCGCGTGACTTTA
ATCTATGATGGCGATAATATTCTTGCTAGCGGGACACATTTGGAAGCAAAATCATCTGACGGTAGTTTAGAGTTTAATGT
TTTCATTCCGAATGTCCAAAGTGGTTTAAGCTTTGATTATTATTCAGGTCAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.068

81.944

0.566
  endA Streptococcus pneumoniae D39

69.068

81.944

0.566
  endA Streptococcus pneumoniae R6

69.068

81.944

0.566
  endA Streptococcus pneumoniae TIGR4

69.068

81.944

0.566

Multiple sequence alignment