Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SSUJS14_RS04465 Genome accession   NC_017618
Coordinates   900666..902435 (+) Length   589 a.a.
NCBI ID   WP_014636385.1    Uniprot ID   -
Organism   Streptococcus suis JS14     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 895666..907435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUJS14_RS04435 (SSUJS14_0876) - 896478..897233 (+) 756 WP_012775077.1 class I SAM-dependent methyltransferase -
  SSUJS14_RS04440 (SSUJS14_0877) pcp 897230..897877 (+) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  SSUJS14_RS04445 (SSUJS14_0878) - 897877..898185 (+) 309 WP_014635963.1 DUF4298 domain-containing protein -
  SSUJS14_RS04450 (SSUJS14_0879) rpsP 898309..898581 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  SSUJS14_RS04455 (SSUJS14_0880) - 898603..898845 (+) 243 WP_012028079.1 KH domain-containing protein -
  SSUJS14_RS04460 (SSUJS14_0881) rcrP 898921..900657 (+) 1737 WP_012775079.1 ABC transporter ATP-binding protein Regulator
  SSUJS14_RS04465 (SSUJS14_0882) rcrQ 900666..902435 (+) 1770 WP_014636385.1 ABC transporter ATP-binding protein Regulator
  SSUJS14_RS04470 (SSUJS14_0883) - 902492..903415 (-) 924 WP_011922329.1 polysaccharide deacetylase family protein -
  SSUJS14_RS04475 (SSUJS14_0884) - 903520..904806 (+) 1287 WP_011922330.1 homoserine dehydrogenase -
  SSUJS14_RS04480 (SSUJS14_0885) thrB 904810..905670 (+) 861 WP_011922331.1 homoserine kinase -
  SSUJS14_RS04485 (SSUJS14_0886) murB 905905..906813 (+) 909 WP_014636386.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65655.61 Da        Isoelectric Point: 5.4023

>NTDB_id=40583 SSUJS14_RS04465 WP_014636385.1 900666..902435(+) (rcrQ) [Streptococcus suis JS14]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLSGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTAGLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIQNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=40583 SSUJS14_RS04465 WP_014636385.1 900666..902435(+) (rcrQ) [Streptococcus suis JS14]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGTCACAAAATTAACAAAATTCCTGTTTCTTACTTTGATAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACTTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTCTCCGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCCCTGGTACACGGCTTCTCAAATAT
CGCCTATGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCACAGTTACAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTGGAGTTGACAGCTGGTTTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTTGCTATCGTTGGTCCAACAGGGGCAGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCAAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTACGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.39

100

0.435

Multiple sequence alignment