Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HYH05_RS01310 Genome accession   NZ_CP058574
Coordinates   301082..301846 (-) Length   254 a.a.
NCBI ID   WP_001136250.1    Uniprot ID   -
Organism   Escherichia coli strain EC1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 296082..306846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYH05_RS01280 (HYH05_01280) - 296717..298075 (-) 1359 WP_001306345.1 PTS galactitol transporter subunit IIC -
  HYH05_RS01285 (HYH05_01285) - 298152..298433 (-) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  HYH05_RS01290 (HYH05_01290) - 298430..298903 (-) 474 WP_001377099.1 PTS sugar transporter subunit IIA -
  HYH05_RS01295 (HYH05_01295) - 298928..299674 (-) 747 WP_001322918.1 GntR family transcriptional regulator -
  HYH05_RS01300 (HYH05_01300) nikR 299873..300274 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  HYH05_RS01305 (HYH05_01305) nikE 300279..301085 (-) 807 WP_000173693.1 nickel import ATP-binding protein NikE -
  HYH05_RS01310 (HYH05_01310) amiE 301082..301846 (-) 765 WP_001136250.1 nickel import ATP-binding protein NikD Regulator
  HYH05_RS01315 (HYH05_01315) nikC 301846..302679 (-) 834 WP_038999760.1 nickel ABC transporter permease subunit NikC -
  HYH05_RS01320 (HYH05_01320) nikB 302676..303620 (-) 945 WP_000947088.1 nickel ABC transporter permease subunit NikB -
  HYH05_RS01325 (HYH05_01325) nikA 303620..305194 (-) 1575 WP_000493127.1 nickel ABC transporter substrate-binding protein -
  HYH05_RS01330 (HYH05_01330) acpT 305305..305892 (-) 588 WP_000285765.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=405643 HYH05_RS01310 WP_001136250.1 301082..301846(-) (amiE) [Escherichia coli strain EC1]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGSSGSGKSLTCAAALGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=405643 HYH05_RS01310 WP_001136250.1 301082..301846(-) (amiE) [Escherichia coli strain EC1]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAACCGCTGGTGCACGGCGTATCGTTAACTCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCAGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCCGCACTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTTCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCCACGCTTACCGCTGCTTTAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398