Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GNK04_RS15500 Genome accession   NZ_CP046564
Coordinates   2963765..2966119 (-) Length   784 a.a.
NCBI ID   WP_159783420.1    Uniprot ID   A0A7Z2K6T2
Organism   Bacillus sp. N1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2958765..2971119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNK04_RS15480 (GNK04_15480) - 2958936..2960366 (+) 1431 WP_159783413.1 N-acetylmuramoyl-L-alanine amidase -
  GNK04_RS15485 (GNK04_15485) dtd 2960439..2960882 (-) 444 WP_159783415.1 D-aminoacyl-tRNA deacylase -
  GNK04_RS15490 (GNK04_15490) - 2960902..2963082 (-) 2181 WP_159783417.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  GNK04_RS15495 (GNK04_15495) - 2963252..2963764 (-) 513 WP_098444373.1 adenine phosphoribosyltransferase -
  GNK04_RS15500 (GNK04_15500) recJ 2963765..2966119 (-) 2355 WP_159783420.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GNK04_RS15505 (GNK04_15505) - 2966250..2966585 (-) 336 WP_159783422.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  GNK04_RS15510 (GNK04_15510) - 2966587..2967528 (-) 942 WP_159783424.1 cation diffusion facilitator family transporter -
  GNK04_RS23445 (GNK04_15515) secDF 2967659..2969873 (-) 2215 Protein_3019 protein translocase subunit SecDF -
  GNK04_RS15520 (GNK04_15520) - 2969983..2970240 (-) 258 WP_159783425.1 post-transcriptional regulator -
  GNK04_RS15525 (GNK04_15525) - 2970315..2970800 (-) 486 WP_159783427.1 small multi-drug export protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88074.14 Da        Isoelectric Point: 4.8853

>NTDB_id=405555 GNK04_RS15500 WP_159783420.1 2963765..2966119(-) (recJ) [Bacillus sp. N1-1]
MLRSKTRWKLAETDETNIDRLQSKLGISRLAASLLVNRGISGEEEARRFLYKENLTYHDPFLMSGMKEAVERIQQAIASN
ERILIFGDYDADGVSSTTVLVYTLRELGATFDYYIPNRFTEGYGPNEAAFRQAKEDGYHLIVTVDTGISGVHEAEVAKEI
GVDLIITDHHEPPPVLPDAYATINPKKPGCTYPFKGLAGVGVAFKLSQALLGRIPGHLLEIAAMGTIADLVPLQDENRLL
ASEGIRALQNSNKPGIKALLDVCGLKDQELNEEHLGFGIGPRLNAAGRLDSADPAVELLTTDDPLLAEQLASDIDALNKN
RQELVNTMTKEAIEEVETNYLSDESNRVLIIAKEGWNAGVIGIVASRLVEKYYRPTIVMSIDREKGVAKGSARSIEAFDM
FANLSECRDILPHFGGHPMAAGMTIDLDYLEQLRTRLNNLALEKLTEEDLTPLTKVDLHCHVEDVTLETIEEMNLLAPFG
VSNPKPVVMLKDVHLSQIRRIGSQDNHLKVGLEENGTTLDGVGFHFGYAFEEIASRAAVSVIGQLSVNEWNGLRKPQIFV
KDIAVNEWQLFDYRGIRDLKKRLETLPLDKLVMVAFQNNTISKLGLEKWKDYVITDPSDKDVSFDQKYVMLLDLPDLEED
LVNLFRSGGTPDRTYVVFEHEEDHFFSTLPSREDFKWYYAFLMKKGSFHLRDAEKLAKHKGWSKETVPFMSEVFFELDFV
TMDNGLISLNPQSVKTELTSSKTYRSKLEKAKLENDFCYSSYHALKSWFNQSVNCFNSTEEAIK

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=405555 GNK04_RS15500 WP_159783420.1 2963765..2966119(-) (recJ) [Bacillus sp. N1-1]
ATGTTAAGATCTAAAACGCGCTGGAAACTTGCTGAAACAGATGAAACAAACATTGATCGGCTCCAGAGTAAACTAGGAAT
TTCTCGACTAGCTGCTTCGCTTTTAGTGAATCGAGGTATCAGTGGAGAAGAGGAAGCTAGAAGGTTTTTATATAAAGAAA
ACTTAACATATCATGACCCGTTCCTAATGAGTGGAATGAAGGAAGCGGTTGAAAGAATTCAACAAGCCATCGCTTCGAAT
GAGAGAATTCTAATTTTTGGAGATTATGATGCGGATGGAGTTAGTAGTACGACCGTCCTGGTTTATACGTTACGTGAGCT
TGGTGCAACCTTCGATTATTATATTCCAAATCGCTTTACTGAAGGATACGGACCAAATGAAGCAGCCTTTAGACAGGCAA
AGGAAGATGGTTATCATCTCATTGTAACGGTTGATACTGGTATTTCGGGTGTCCATGAGGCAGAAGTTGCAAAGGAAATC
GGTGTTGATCTCATAATTACAGATCATCACGAGCCACCTCCTGTACTTCCTGATGCTTATGCGACGATTAATCCCAAGAA
GCCGGGATGCACTTACCCCTTTAAGGGGCTCGCGGGTGTAGGCGTTGCGTTTAAACTATCACAGGCCTTACTTGGTCGCA
TTCCAGGACATTTACTTGAGATTGCAGCAATGGGTACAATTGCAGATTTAGTTCCGCTTCAAGATGAGAATCGTCTTCTA
GCAAGTGAAGGAATACGAGCACTTCAAAATTCAAATAAGCCCGGAATTAAAGCGCTCTTAGACGTATGTGGCTTGAAAGA
TCAGGAATTAAACGAAGAACATCTTGGTTTTGGAATAGGACCAAGATTAAATGCTGCAGGACGTTTAGATAGTGCAGATC
CTGCTGTTGAATTGCTTACAACAGATGATCCGTTACTAGCAGAACAACTTGCTTCTGATATTGATGCTCTGAATAAAAAC
CGTCAAGAGCTTGTAAACACAATGACGAAAGAAGCGATCGAAGAAGTTGAAACAAATTATTTAAGTGATGAAAGCAATCG
CGTCTTGATAATTGCGAAAGAAGGATGGAATGCAGGGGTAATTGGAATTGTCGCTTCTCGACTTGTTGAGAAATATTATC
GTCCAACGATTGTGATGAGTATTGACCGAGAAAAAGGTGTGGCAAAAGGATCCGCTCGTAGTATTGAGGCATTCGATATG
TTTGCAAATCTATCTGAATGTAGAGACATTCTTCCGCATTTCGGGGGCCACCCAATGGCAGCTGGGATGACGATTGATTT
GGACTACTTGGAGCAACTGCGCACTAGACTGAATAACCTGGCTTTAGAGAAGTTAACGGAAGAAGATCTAACTCCACTTA
CAAAAGTGGATCTTCACTGTCACGTAGAAGATGTAACGCTCGAAACGATTGAAGAGATGAATCTTCTTGCTCCCTTTGGG
GTGAGTAATCCAAAGCCAGTTGTTATGCTCAAGGATGTTCATTTATCTCAAATCAGAAGGATAGGTAGTCAGGACAATCA
TCTTAAGGTAGGTCTTGAGGAAAATGGCACAACGCTTGACGGCGTAGGATTCCATTTTGGCTATGCTTTTGAAGAAATTG
CATCAAGGGCAGCAGTAAGTGTCATCGGTCAGCTCTCTGTGAACGAATGGAATGGGCTTCGAAAGCCACAAATTTTCGTG
AAAGATATCGCAGTTAATGAGTGGCAGCTTTTTGATTACCGAGGCATACGAGATTTAAAGAAACGTCTGGAAACTCTGCC
GCTAGATAAGTTAGTGATGGTAGCTTTTCAGAACAATACGATCTCAAAACTAGGTCTTGAAAAATGGAAGGACTACGTCA
TTACTGATCCATCAGACAAAGACGTTTCGTTTGATCAAAAGTATGTCATGTTGCTTGATCTTCCTGATTTAGAAGAAGAC
CTTGTGAACCTTTTTCGCTCAGGTGGTACACCAGATCGAACTTATGTGGTATTTGAGCATGAGGAAGATCATTTCTTCTC
AACTTTACCTTCACGTGAAGATTTCAAATGGTATTATGCTTTCTTAATGAAGAAAGGGAGCTTCCATTTACGAGACGCAG
AAAAGCTCGCAAAACATAAAGGATGGTCAAAAGAAACGGTACCTTTTATGTCAGAGGTGTTTTTTGAGCTAGATTTTGTT
ACAATGGATAATGGACTGATTTCTCTAAATCCACAATCTGTCAAAACTGAATTAACTTCTTCTAAAACGTATAGGAGTAA
GCTTGAAAAAGCAAAGCTCGAAAACGATTTTTGCTATTCCTCCTATCATGCTTTGAAAAGTTGGTTCAATCAATCAGTTA
ATTGTTTCAATAGCACTGAGGAGGCCATAAAGTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-562)

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-769)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2K6T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.871

98.852

0.513

Multiple sequence alignment