Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HXS80_RS32455 Genome accession   NZ_CP058556
Coordinates   7543173..7544543 (-) Length   456 a.a.
NCBI ID   WP_030724068.1    Uniprot ID   -
Organism   Streptomyces sp. CB04723     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7538173..7549543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS32430 (HXS80_32430) - 7538536..7538880 (-) 345 WP_179184044.1 DUF6167 family protein -
  HXS80_RS32435 (HXS80_32435) - 7538888..7539343 (-) 456 WP_030119943.1 DUF948 domain-containing protein -
  HXS80_RS32440 (HXS80_32440) - 7539521..7541566 (+) 2046 WP_179184045.1 AAA family ATPase -
  HXS80_RS32445 (HXS80_32445) rpsD 7541584..7542198 (-) 615 WP_003970343.1 30S ribosomal protein S4 -
  HXS80_RS32450 (HXS80_32450) - 7542390..7543091 (+) 702 WP_032772493.1 DUF2470 domain-containing protein -
  HXS80_RS32455 (HXS80_32455) rarA 7543173..7544543 (-) 1371 WP_030724068.1 replication-associated recombination protein A Machinery gene
  HXS80_RS32460 (HXS80_32460) - 7544652..7545290 (-) 639 WP_030116255.1 vitamin K epoxide reductase family protein -
  HXS80_RS32465 (HXS80_32465) hisS 7545625..7546887 (-) 1263 WP_030277763.1 histidine--tRNA ligase -
  HXS80_RS32470 (HXS80_32470) - 7546905..7547594 (-) 690 WP_179184046.1 MBL fold metallo-hydrolase -
  HXS80_RS32475 (HXS80_32475) - 7547746..7548540 (+) 795 WP_179184047.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48399.68 Da        Isoelectric Point: 5.8519

>NTDB_id=405554 HXS80_RS32455 WP_030724068.1 7543173..7544543(-) (rarA) [Streptomyces sp. CB04723]
MEPDLFTAAAEDRQEKDPTSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGASSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRSLLRRALTEERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAAAGAAIATGEAE
ITLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAARDDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDVQGGIAAQQYAPDAVSDRQYYTPTRYGAEARYADVVERVRERLGRTGEDADPS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=405554 HXS80_RS32455 WP_030724068.1 7543173..7544543(-) (rarA) [Streptomyces sp. CB04723]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGACGAGCAGTCCTCTCGCCGTCCGGAT
GCGTCCGCGCACCCTCGACGAGGTGGTCGGCCAGCAGCACCTGCTGAAGCCGGGATCGCCGCTGCGCCGCCTGGTCGGCG
AGGGCGGCGGGGGTCCGGCCGGGGCGTCCTCCGTCATCCTCTGGGGCCCGCCCGGCACCGGCAAGACGACTCTGGCGTAC
GTGGTCAGCAAGGCCACCAACAAACGGTTCGTCGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCAT
CGAGGGCGCGCGGCGCGCGACCGGCGGATTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGG
CCCAGCAGGACTCCCTGCTCCCCGCCGTGGAGAACCGCTGGGTCACCCTCATCGCGGCCACCACGGAGAATCCGTACTTC
TCGGTCATCTCGCCGCTGCTCTCGCGCTCCCTGCTGCTCACCCTGGAGCCGCTGACCGACGACGACCTGCGCTCGCTCCT
GCGCCGGGCGCTCACCGAGGAGCGGGGGCTCGGCGGCGCGGTCACCCTGCCCGAGGACGCCGAGGCCCATCTGCTGCGGA
TCGCCGGCGGCGACGCGCGGAGGGCGCTCACCGCCCTGGAGGCGGCGGCCGGTGCGGCCATCGCCACGGGGGAGGCGGAG
ATCACCCTGGAGACGGTCGAGGCGACCGTCGACCGCGCCGCGGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCCAGCGCGCTCATCAAGTCGATCCGCGGCTCCGACGTGGACGCGGCCCTGCACTACCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTCGCGGACCCCACCGCGCTG
CCGACGGCGGTGGCGGCGGCTCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCGGCGCTCACTCTCAGCCACGCCACCAT
CGCGCTGGCCCTCGCCCCCAAGTCCAACGCGGCGACGCTGGCGATCTCCGCCGCCCGGGACGATGTGCGCCGGGGGCTCG
CCGGGCCGGTCCCGGCCCACCTGCGCGACGGTCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGGTACGTCTAC
CCGCACGACGTGCAGGGCGGCATCGCCGCCCAGCAGTACGCCCCGGACGCGGTCAGCGACCGGCAGTACTACACCCCCAC
GCGGTACGGCGCGGAGGCGCGGTACGCGGACGTCGTCGAGCGGGTGCGCGAGCGCCTCGGCCGCACGGGCGAGGACGCGG
ACCCGTCGTAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.444

94.737

0.421

Multiple sequence alignment