Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GNK04_RS15420 Genome accession   NZ_CP046564
Coordinates   2945464..2947734 (-) Length   756 a.a.
NCBI ID   WP_159783395.1    Uniprot ID   A0A7Z2K6E0
Organism   Bacillus sp. N1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2940464..2952734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNK04_RS15400 (GNK04_15400) - 2940693..2940956 (-) 264 WP_098444356.1 IreB family regulatory phosphoprotein -
  GNK04_RS15405 (GNK04_15405) alaS 2941036..2943669 (-) 2634 WP_159783393.1 alanine--tRNA ligase -
  GNK04_RS15410 (GNK04_15410) - 2944039..2945103 (-) 1065 WP_240903944.1 AI-2E family transporter -
  GNK04_RS15415 (GNK04_15415) - 2945131..2945319 (-) 189 WP_098444358.1 hypothetical protein -
  GNK04_RS15420 (GNK04_15420) recD2 2945464..2947734 (-) 2271 WP_159783395.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GNK04_RS15425 (GNK04_15425) - 2947762..2948430 (-) 669 WP_159783397.1 tetratricopeptide repeat protein -
  GNK04_RS15430 (GNK04_15430) mnmA 2948539..2949654 (-) 1116 WP_159783399.1 tRNA 2-thiouridine(34) synthase MnmA -
  GNK04_RS15435 (GNK04_15435) - 2949699..2950841 (-) 1143 WP_159783401.1 cysteine desulfurase family protein -
  GNK04_RS15440 (GNK04_15440) - 2950879..2951298 (-) 420 WP_159783403.1 Rrf2 family transcriptional regulator -
  GNK04_RS15445 (GNK04_15445) - 2951231..2951938 (-) 708 WP_205689111.1 YitT family protein -

Sequence

Protein


Download         Length: 756 a.a.        Molecular weight: 85495.24 Da        Isoelectric Point: 4.7885

>NTDB_id=405554 GNK04_RS15420 WP_159783395.1 2945464..2947734(-) (recD2) [Bacillus sp. N1-1]
MDQPQKGYIKGRPIQMIFFNEDSLYGVARLRISETNEAYDEKEVVVNGMIPRLLEDETYVFYGRFTDHPRYGKQYAVESF
ERQMPESKPGLIQYLSSDLFHGIGEKTAESIVDALGERAIAKIMRDPSILSKVPKLSEEKAKGLYDSLMEHQGLDQIMIR
LTELGFGPRLSMKIFKAYKQETLEIVEKNPYQLIQDVEGIGFRRADDLGKSIGIEGKHPDRIRAACLHTLNEQTLQEGHV
YLEYNALIRSVNELLGDRLDEADISRELISLYESDKLILDRERIYLHSLYYAEKGLVTGLNNVMSQTEYADSFPESEFYR
ALGDLEERLGIQYAPSQREAVQKAISSPFMILTGGPGTGKTTVIKGIVELYAELNGLSLDPKDYTKENPFPVLLVAPTGR
AAKRMSEATGLPAFTIHRLLGWKGEAGFEHDENNPIEGKLLIVDEVSMVDVWLANQLFKSLPSQIQVIVVGDEDQLPSVG
PGQVLKDMIDSHAVPVSRLTDIYRQAEGSSIIDLAHSIKEGELPEEFHKPTPDRRFFPCSQSQIIEVVSQVCGNALKKGY
SPRDIQVLAPMYRGSAGVDRLNQELQKLFNPPTDQRRELFHGDLVYRVGDKVLQLVNNPEDNVFNGDMGEVVSVFFAKEN
IEKQDQLVVSFDGQEVVYDRPDFNQLTHAYCCSIHKSQGSEFPIVVLPIVRGYYRMLRKNLLYTAVTRSKDYLILCGEED
AIKLAIKTEDDQIRNTQLTEKLQEMIGEQTTIEESI

Nucleotide


Download         Length: 2271 bp        

>NTDB_id=405554 GNK04_RS15420 WP_159783395.1 2945464..2947734(-) (recD2) [Bacillus sp. N1-1]
ATGGATCAGCCACAAAAAGGCTATATCAAAGGAAGACCGATACAAATGATTTTCTTCAATGAAGATAGTTTGTATGGGGT
GGCAAGACTACGAATATCAGAAACGAATGAAGCCTACGATGAGAAAGAAGTCGTTGTAAATGGAATGATTCCAAGGCTTT
TGGAAGATGAAACGTACGTTTTCTATGGACGGTTTACAGACCATCCACGCTACGGAAAACAGTATGCTGTTGAATCATTT
GAGCGACAGATGCCTGAATCAAAACCGGGGCTTATTCAATACTTATCAAGTGATTTATTCCATGGAATTGGTGAAAAGAC
AGCGGAATCGATTGTTGATGCGCTAGGAGAGCGCGCAATTGCTAAGATTATGCGTGATCCTTCAATATTAAGTAAGGTAC
CAAAGCTATCTGAAGAAAAAGCAAAAGGATTATATGATTCTCTCATGGAGCATCAGGGGCTTGACCAAATTATGATTCGA
TTAACTGAATTAGGGTTTGGACCGAGACTATCGATGAAAATTTTTAAAGCCTATAAGCAAGAAACACTCGAAATTGTTGA
GAAAAATCCTTATCAGCTTATTCAAGACGTGGAAGGCATTGGTTTTCGTCGAGCGGACGATTTAGGGAAATCGATTGGTA
TTGAGGGAAAGCATCCCGATCGCATTAGGGCGGCATGTCTTCATACGTTAAATGAACAAACGTTACAGGAAGGGCATGTG
TATTTAGAGTACAATGCTTTGATTCGATCTGTAAATGAGCTGCTAGGTGATCGACTCGATGAAGCAGATATTTCAAGGGA
ACTGATCTCGCTTTACGAGAGTGATAAGTTAATTCTTGATCGAGAGAGAATCTATTTACATTCACTTTACTATGCTGAAA
AAGGTCTTGTCACTGGATTGAATAATGTGATGTCGCAAACAGAGTATGCTGATTCTTTTCCTGAATCTGAATTTTATCGC
GCACTTGGAGATCTCGAAGAACGACTCGGCATTCAATATGCGCCATCACAGCGTGAAGCGGTACAAAAAGCGATATCGTC
TCCGTTCATGATTTTAACTGGCGGACCTGGTACGGGCAAAACAACCGTTATAAAAGGGATTGTTGAGCTTTATGCTGAAT
TAAATGGCCTTTCTTTAGATCCAAAAGATTACACAAAAGAAAATCCCTTTCCCGTTCTGCTCGTCGCACCAACAGGAAGA
GCAGCCAAACGAATGAGTGAAGCAACCGGATTACCGGCTTTCACGATACATAGATTACTTGGCTGGAAAGGTGAGGCGGG
ATTTGAACATGATGAGAATAATCCAATTGAAGGTAAATTATTAATTGTTGACGAAGTATCTATGGTTGACGTGTGGCTAG
CCAATCAATTATTTAAATCCTTACCATCTCAAATTCAAGTGATTGTTGTTGGTGATGAAGATCAACTTCCTTCAGTAGGA
CCAGGACAGGTGCTTAAGGATATGATTGATTCACATGCTGTTCCCGTTAGTAGACTGACGGACATTTACCGGCAGGCTGA
AGGCTCTTCGATTATTGATCTTGCCCACTCCATTAAAGAAGGAGAGCTTCCAGAAGAGTTTCATAAACCGACGCCTGATC
GAAGGTTCTTTCCTTGTTCTCAATCTCAGATTATTGAGGTTGTTTCGCAAGTTTGTGGCAATGCATTAAAGAAGGGATAC
TCTCCTCGAGATATTCAAGTTCTTGCTCCGATGTATCGAGGATCAGCTGGAGTGGATCGACTAAATCAGGAGCTTCAAAA
GCTATTTAATCCTCCAACTGATCAGCGAAGAGAGCTTTTTCATGGAGATCTCGTGTATCGAGTCGGAGATAAAGTTCTTC
AACTTGTAAACAATCCTGAAGACAATGTTTTCAATGGCGATATGGGCGAGGTGGTTTCTGTATTCTTTGCGAAAGAAAAT
ATTGAAAAGCAGGATCAACTTGTTGTTTCTTTTGATGGACAGGAAGTGGTTTATGACAGGCCTGACTTTAATCAATTAAC
ACATGCCTACTGCTGCTCTATCCATAAATCCCAGGGTAGTGAGTTTCCAATTGTGGTTCTTCCTATTGTAAGAGGATATT
ATCGGATGCTGCGGAAGAACCTTCTTTATACAGCCGTTACAAGAAGCAAAGATTATTTGATTTTGTGCGGCGAAGAAGAT
GCGATTAAGCTTGCTATAAAAACAGAAGATGATCAGATTCGAAATACGCAGTTAACAGAGAAATTGCAAGAAATGATTGG
CGAACAAACAACAATTGAAGAATCAATCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-241)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(668-716)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(581-651)

AAA domain (AAA_30)

(333-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2K6E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.036

98.81

0.583

Multiple sequence alignment