Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   GOM46_RS02280 Genome accession   NZ_CP046525
Coordinates   447968..448915 (+) Length   315 a.a.
NCBI ID   WP_235083872.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442968..453915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS02260 (GOM46_02245) - 443141..444034 (+) 894 WP_235083869.1 ABC transporter ATP-binding protein -
  GOM46_RS02265 (GOM46_02250) - 444031..445230 (+) 1200 WP_235083870.1 ABC transporter permease -
  GOM46_RS02270 (GOM46_02255) rpoE 445408..445983 (+) 576 WP_006150244.1 DNA-directed RNA polymerase subunit delta -
  GOM46_RS02275 (GOM46_02260) - 446264..447871 (+) 1608 WP_235083871.1 CTP synthase -
  GOM46_RS02280 (GOM46_02265) comYH 447968..448915 (+) 948 WP_235083872.1 class I SAM-dependent methyltransferase Machinery gene
  GOM46_RS02285 (GOM46_02270) - 448970..450160 (+) 1191 WP_235083873.1 acetate kinase -
  GOM46_RS02290 (GOM46_02275) birA 450221..451156 (-) 936 WP_235083874.1 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA -
  GOM46_RS02295 (GOM46_02280) - 451371..452561 (+) 1191 WP_235083875.1 O-antigen ligase family protein -
  GOM46_RS02300 (GOM46_02285) - 452618..453166 (-) 549 WP_235083876.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 35692.93 Da        Isoelectric Point: 4.3329

>NTDB_id=405057 GOM46_RS02280 WP_235083872.1 447968..448915(+) (comYH) [Streptococcus infantis strain SO]
MDFEKIEQAYTYLLENVQIIQNDLATSFYDALIEQNGIYLDGQTNLEQVKKNNQALKRLALRKEEWLRTYQFLLMKAAQT
EPLQANHQFTPDAIGHLMIFIIEQLCPTEDLSLLELGSGMGILGSSFLTSMNKRVDYLGIELDDLLIDLAASMAEVMDLQ
MGFVQGDAVRPQVLKESDIIVSDLPVGYYPDDQTASRYQVAAKGEHTYAHHLLMEQSLKYLKTGGYAIFLAPTDLLTSPQ
SELLKSWLTEQAQLVAIIALPEDLFVQGAQSKTIFVLQKKTGEAIEPFVYPLTSLRDSEILMDFKEKFQIWSQYS

Nucleotide


Download         Length: 948 bp        

>NTDB_id=405057 GOM46_RS02280 WP_235083872.1 447968..448915(+) (comYH) [Streptococcus infantis strain SO]
ATGGATTTTGAAAAAATTGAACAGGCATATACCTATTTATTAGAAAATGTCCAAATCATTCAAAACGATTTGGCGACAAG
CTTTTATGATGCCTTGATTGAACAAAATGGGATCTATCTCGATGGTCAAACCAATCTGGAGCAAGTCAAAAAAAATAACC
AGGCCTTAAAACGCTTAGCGCTTCGAAAAGAGGAGTGGTTACGGACCTATCAATTTTTGCTAATGAAGGCAGCGCAAACA
GAACCTCTTCAAGCCAACCATCAGTTCACACCGGATGCCATTGGTCACTTGATGATTTTTATCATAGAACAGCTTTGTCC
TACTGAAGATCTAAGTCTGTTAGAGTTAGGTTCTGGAATGGGAATTCTGGGATCTAGCTTCTTGACATCTATGAACAAAA
GGGTTGATTACCTTGGAATAGAGCTAGATGATCTCTTGATTGATTTGGCAGCAAGCATGGCTGAAGTTATGGATCTACAA
ATGGGCTTTGTCCAAGGAGATGCAGTGCGTCCACAAGTATTAAAAGAAAGTGATATTATTGTGAGTGACCTACCGGTCGG
CTACTACCCAGATGATCAGACAGCCTCACGATATCAAGTAGCAGCTAAAGGTGAACATACCTATGCGCATCATCTGTTAA
TGGAACAATCGCTCAAGTATCTTAAGACAGGTGGTTATGCGATTTTTCTAGCTCCGACAGATTTATTAACGAGTCCTCAG
AGTGAACTTTTAAAATCCTGGCTGACTGAACAGGCTCAACTAGTAGCAATCATAGCTTTACCAGAGGATCTCTTTGTACA
GGGAGCACAGTCTAAAACGATCTTTGTTCTACAGAAGAAGACGGGAGAAGCGATTGAACCATTTGTTTATCCACTTACGA
GTCTTCGTGACTCTGAAATTTTGATGGATTTTAAGGAAAAGTTTCAAATTTGGAGTCAATATTCATGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

55.911

99.365

0.556
  comYH Streptococcus mutans UA140

55.591

99.365

0.552

Multiple sequence alignment