Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   B18_RS05435 Genome accession   NZ_CP058332
Coordinates   1165995..1166720 (+) Length   241 a.a.
NCBI ID   WP_043086956.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain B18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1160995..1171720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B18_RS05405 (B18_05390) - 1161115..1161993 (-) 879 WP_021204840.1 allophanate hydrolase subunit 1 -
  B18_RS05410 (B18_05395) - 1161995..1163371 (-) 1377 WP_043086954.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  B18_RS05415 (B18_05400) - 1163382..1163630 (-) 249 WP_043086955.1 acetyl-CoA carboxylase -
  B18_RS05420 (B18_05405) - 1163707..1164465 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  B18_RS05425 (B18_05410) - 1164583..1165509 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  B18_RS05430 (B18_05415) - 1165563..1165856 (+) 294 WP_003084806.1 hypothetical protein -
  B18_RS05435 (B18_05420) comF 1165995..1166720 (+) 726 WP_043086956.1 ComF family protein Machinery gene
  B18_RS05440 (B18_05425) - 1166762..1167082 (+) 321 WP_043086957.1 YfiM family lipoprotein -
  B18_RS05445 (B18_05430) - 1167150..1167908 (+) 759 WP_003103305.1 TOBE domain-containing protein -
  B18_RS05450 (B18_05435) - 1167970..1168944 (+) 975 WP_033968952.1 serine/threonine protein kinase -
  B18_RS05455 (B18_05440) rarD 1169147..1170043 (+) 897 WP_003103301.1 EamA family transporter RarD -
  B18_RS05460 (B18_05445) - 1170733..1171248 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27120.66 Da        Isoelectric Point: 11.2212

>NTDB_id=404997 B18_RS05435 WP_043086956.1 1165995..1166720(+) (comF) [Pseudomonas aeruginosa strain B18]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQMCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=404997 B18_RS05435 WP_043086956.1 1165995..1166720(+) (comF) [Pseudomonas aeruginosa strain B18]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGATGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382

Multiple sequence alignment