Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HWQ50_RS05095 Genome accession   NZ_CP058331
Coordinates   1107355..1108080 (-) Length   241 a.a.
NCBI ID   WP_043086956.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ACR22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1102355..1113080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ50_RS05070 (HWQ50_05065) - 1102827..1103342 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  HWQ50_RS05075 (HWQ50_05070) rarD 1104032..1104928 (-) 897 WP_003103301.1 EamA family transporter RarD -
  HWQ50_RS05080 (HWQ50_05075) - 1105131..1106105 (-) 975 WP_033968952.1 serine/threonine protein kinase -
  HWQ50_RS05085 (HWQ50_05080) - 1106167..1106925 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  HWQ50_RS05090 (HWQ50_05085) - 1106993..1107313 (-) 321 WP_043086957.1 YfiM family lipoprotein -
  HWQ50_RS05095 (HWQ50_05090) comF 1107355..1108080 (-) 726 WP_043086956.1 ComF family protein Machinery gene
  HWQ50_RS05100 (HWQ50_05095) - 1108219..1108512 (-) 294 WP_003084806.1 hypothetical protein -
  HWQ50_RS05105 (HWQ50_05100) - 1108566..1109492 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  HWQ50_RS05110 (HWQ50_05105) - 1109610..1110368 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  HWQ50_RS05115 (HWQ50_05110) - 1110445..1110693 (+) 249 WP_043086955.1 acetyl-CoA carboxylase -
  HWQ50_RS05120 (HWQ50_05115) - 1110704..1112080 (+) 1377 WP_043086954.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  HWQ50_RS05125 (HWQ50_05120) - 1112082..1112960 (+) 879 WP_021204840.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27120.66 Da        Isoelectric Point: 11.2212

>NTDB_id=404915 HWQ50_RS05095 WP_043086956.1 1107355..1108080(-) (comF) [Pseudomonas aeruginosa strain ACR22]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQMCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=404915 HWQ50_RS05095 WP_043086956.1 1107355..1108080(-) (comF) [Pseudomonas aeruginosa strain ACR22]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGATGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382