Detailed information NTG0404874

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: GE024_RS09195
• Genome accession: NZ_CP046521
• Coordinates: 1854318..1855250 (-)
• Length: 310 a.a.
• NCBI ID: WP_093999472.1
• Uniprot ID: -
• Organism: Streptococcus canis strain HL_100
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1849318..1860250

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE024_RS09170 (GE024_09215)	tsaD	1849805..1850821 (-)	1017	WP_093999469.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
GE024_RS09175 (GE024_09220)	rimI	1850811..1851236 (-)	426	WP_093999470.1	ribosomal protein S18-alanine N-acetyltransferase	-
GE024_RS09180 (GE024_09225)	tsaB	1851238..1851936 (-)	699	WP_093999471.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
GE024_RS09185 (GE024_09230)	-	1852221..1852451 (+)	231	WP_003045256.1	DNA-dependent RNA polymerase subunit epsilon	-
GE024_RS09190 (GE024_09235)	rnjA	1852453..1854135 (+)	1683	WP_003045259.1	ribonuclease J1	-
GE024_RS09195 (GE024_09240)	amiF	1854318..1855250 (-)	933	WP_093999472.1	ABC transporter ATP-binding protein	Regulator
GE024_RS09200 (GE024_09245)	oppD	1855247..1856296 (-)	1050	WP_093999473.1	ABC transporter ATP-binding protein	Regulator
GE024_RS09205 (GE024_09250)	-	1856308..1857339 (-)	1032	WP_093999474.1	ABC transporter permease	-
GE024_RS09210 (GE024_09255)	-	1857349..1858263 (-)	915	WP_093999475.1	ABC transporter permease	-
GE024_RS11330	-	1858501..1858944 (+)	444	Protein_1763	transposase	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35168.04 Da
• Isoelectric Point: 6.9395

>NTDB_id=404874 GE024_RS09195 WP_093999472.1 1854318..1855250(-) (amiF) [Streptococcus canis strain HL_100]
MNDNRKKLVALKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTTSKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKCLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITSGHFVLATQEEADHYRRDYR

Nucleotide

• Length: 933 bp

>NTDB_id=404874 GE024_RS09195 WP_093999472.1 1854318..1855250(-) (amiF) [Streptococcus canis strain HL_100]
ATGAATGACAATCGAAAAAAATTAGTAGCCTTAAAAAATGTCTCCCTAACCTTCAATAAAGGCAAGAAAAACGAAGTTAA
GGCTATTGATAACGTTAGTTTTGATATTTATGAAGGCGAAGTCTTTGGACTGGTGGGGGAATCAGGGTCAGGGAAAACAA
CAGTTGGCCGTGCGATTCTGAAACTTTATGATATTAGTGAAGGAGAAATCATTTTTAATGGTGAAACTGTTTCTCACCTG
AAAGGGAAAGACTTGCGGACCTTCCGTAAGGATGCCCAAATGATTTTCCAAGACCCTCAGGCCAGTCTCAATGGTCGTAT
GAAAATTAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGCCTGACAACTTCAAAAGCAGAGCGAGAAGAGCGGGTGC
AAGAACTCCTTGACTTGGTTGGATTGAATAAGGACCATTTAACCCGTTACCCGCATGAATTTTCAGGAGGGCAACGTCAG
CGGATTGGCATTGCCCGCGCTTTGGCGGTTAAACCTAAGTTTATCATTGCTGACGAACCGATCTCAGCTCTCGATGTGTC
CATTCAGGCACAGGTGGTTAATTTGATGCAAAAACTTCAGCACAAACGTGGCTTGACCTATCTCTTTATTGCTCATGACT
TGTCCATGGTTAAATACATTTCTGACCGTATTGGCGTCATGCATTGGGGCAAAATGTTGGAGATTGGGACATCAGATGAT
GTTTACAATCATCCCATTCACCCCTACACCAAGTGTCTGCTTTCGGCTATTCCTGAGCCAGATCCTGATAAAGAACGGCA
ACGTGTGGCTGATGTTTACGACCCTAGTCAAGAATTGGACGGTCAGGAGCGCCAAATGCACGAAATTACCTCAGGGCATT
TTGTTTTAGCTACCCAAGAAGAAGCTGACCATTATCGACGTGACTATCGTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-270)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.115	98.387	0.523
amiF	Streptococcus thermophilus LMG 18311	52.787	98.387	0.519
amiF	Streptococcus salivarius strain HSISS4	52.459	98.387	0.516