Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   GE024_RS03540 Genome accession   NZ_CP046521
Coordinates   689228..690094 (+) Length   288 a.a.
NCBI ID   WP_003047901.1    Uniprot ID   A0AAV3FR50
Organism   Streptococcus canis strain HL_100     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 684228..695094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS03510 (GE024_03525) - 684254..685129 (+) 876 WP_156667679.1 F0F1 ATP synthase subunit gamma -
  GE024_RS03515 (GE024_03530) atpD 685290..686696 (+) 1407 WP_156667680.1 F0F1 ATP synthase subunit beta -
  GE024_RS03520 (GE024_03535) - 686709..687125 (+) 417 WP_003047887.1 F0F1 ATP synthase subunit epsilon -
  GE024_RS03525 (GE024_03540) - 687425..687661 (+) 237 WP_282917434.1 DUF1146 family protein -
  GE024_RS03530 (GE024_03545) murA 687726..689000 (+) 1275 WP_093998507.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GE024_RS03535 (GE024_03550) - 689004..689192 (+) 189 WP_093998508.1 DNA-directed RNA polymerase subunit beta -
  GE024_RS03540 (GE024_03555) endA 689228..690094 (+) 867 WP_003047901.1 DNA/RNA non-specific endonuclease Machinery gene
  GE024_RS03545 (GE024_03560) pheS 690377..691420 (+) 1044 WP_156667681.1 phenylalanine--tRNA ligase subunit alpha -
  GE024_RS03550 (GE024_03570) pheT 692136..694541 (+) 2406 WP_093998510.1 phenylalanine--tRNA ligase subunit beta -
  GE024_RS11125 - 694575..694867 (-) 293 Protein_646 integrase core domain-containing protein -
  GE024_RS03560 (GE024_03580) - 694838..695022 (+) 185 Protein_647 IS3 family transposase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31675.74 Da        Isoelectric Point: 10.0123

>NTDB_id=404856 GE024_RS03540 WP_003047901.1 689228..690094(+) (endA) [Streptococcus canis strain HL_100]
MLTKKKRTRALNSLLLILLVLGSSYLAKSDLIASNHPIKQFYQTLVGEKKESSLTNNNLQADVPTEALAASVLTHSIKEQ
LGADIQWNGAGAFIINQNKTDLNAAVASLPYANNETKWVQGQKVPTRANALLDKSTRQYRDRSQLDKGYRSFKPAGWHQL
YPLKGSYDHAVDRGHLLGYALIGGLKGFDASTSNPNNIATQLSWANQADKSYATGQNYYEGLVRRALDKGHRVRYRVTLL
YDGDNLLASGSHLEAKSADGSLTFNVFVPNVQPGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=404856 GE024_RS03540 WP_003047901.1 689228..690094(+) (endA) [Streptococcus canis strain HL_100]
ATGTTAACAAAGAAAAAACGAACAAGAGCCCTTAATTCCTTGCTATTGATTTTATTAGTTTTGGGATCGAGTTACCTTGC
TAAAAGCGATTTAATTGCCAGTAATCACCCTATCAAGCAATTTTATCAAACCCTTGTTGGGGAGAAGAAGGAGTCATCAC
TCACAAATAATAACTTGCAGGCTGATGTTCCCACAGAAGCTCTGGCAGCATCTGTATTAACTCATTCAATCAAAGAGCAG
CTAGGTGCTGATATTCAGTGGAATGGGGCTGGAGCCTTTATTATTAACCAGAATAAAACAGATTTGAATGCAGCGGTGGC
CAGTCTGCCTTATGCCAACAATGAAACCAAATGGGTGCAAGGGCAAAAGGTTCCCACCAGAGCCAATGCCTTACTTGATA
AGTCAACACGGCAATATCGAGACCGTTCGCAACTTGATAAAGGTTACCGTTCATTTAAGCCAGCAGGTTGGCACCAATTG
TATCCTTTAAAAGGAAGTTATGACCATGCGGTGGATAGAGGGCATTTGCTAGGTTATGCTTTAATTGGCGGGCTGAAAGG
TTTTGATGCATCCACTAGCAATCCCAACAATATTGCTACTCAACTAAGCTGGGCCAATCAGGCGGATAAATCTTATGCAA
CAGGGCAAAATTACTATGAAGGCTTAGTACGTCGTGCTTTAGATAAGGGACATCGCGTCCGCTACCGTGTCACCCTGCTT
TATGATGGTGATAATTTACTAGCAAGCGGTAGCCATTTGGAGGCCAAATCAGCTGATGGCAGCTTGACTTTTAACGTGTT
TGTTCCAAATGTCCAACCAGGATTGACCGTTGATTATCGAACGGGACAGATAGCCATTAATCCCTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

56.818

91.667

0.521
  endA Streptococcus pneumoniae D39

56.818

91.667

0.521
  endA Streptococcus pneumoniae R6

56.818

91.667

0.521
  endA Streptococcus pneumoniae TIGR4

56.818

91.667

0.521

Multiple sequence alignment