Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   VY92_RS04015 Genome accession   NZ_CP058307
Coordinates   836473..837822 (-) Length   449 a.a.
NCBI ID   WP_035684730.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 831473..842822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS03985 (VY92_003990) rsgA 831725..832783 (-) 1059 WP_035684717.1 small ribosomal subunit biogenesis GTPase RsgA -
  VY92_RS03990 (VY92_003995) orn 832855..833403 (+) 549 WP_035684723.1 oligoribonuclease -
  VY92_RS04005 (VY92_004010) prfA 833824..834906 (-) 1083 WP_035684725.1 peptide chain release factor 1 -
  VY92_RS04010 (VY92_004015) serS 835110..836399 (-) 1290 WP_035684727.1 serine--tRNA ligase -
  VY92_RS04015 (VY92_004020) rarA 836473..837822 (-) 1350 WP_035684730.1 replication-associated recombination protein A Machinery gene
  VY92_RS04020 (VY92_004025) - 838010..838369 (+) 360 WP_017806586.1 type II toxin-antitoxin system RelE/ParE family toxin -
  VY92_RS04025 (VY92_004030) - 838371..838679 (+) 309 WP_017806585.1 helix-turn-helix domain-containing protein -
  VY92_RS04030 (VY92_004035) lolA 838731..839351 (-) 621 WP_035684733.1 outer membrane lipoprotein chaperone LolA -
  VY92_RS04035 (VY92_004040) - 839433..842285 (-) 2853 WP_035684736.1 DNA translocase FtsK -
  VY92_RS04040 (VY92_004045) lrp 842287..842766 (-) 480 WP_017806582.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50422.36 Da        Isoelectric Point: 6.6036

>NTDB_id=404680 VY92_RS04015 WP_035684730.1 836473..837822(-) (rarA) [Avibacterium paragallinarum strain AVPG2015]
MSNFAFDFAENDFRPLAARMRPTNLEEYYGQRHLIGVGKPLRKAIEAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTGGVKEIREAIERAKQNRLTGQRTILFVDEVHRFNKSQQDAFLPYIEDGTVTFIGATTENPSFELNNALLSRAKVY
ILKPLTPQDIEQVLQRAIQDKEKGLGNEHFVLEDNVLQLLAEYVNGDARLALNSLELMADMAEEGKNGKILHRTLLTEVL
GERQARFDKQGDRFYDLISALHKSVRGSSPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRGMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYQAFNAAKKMAVESPDYDVPEHLRNAPTKLMKELGYGAEYRYAHNEENAYAA
GENYFPEALKETKFYFPTQRGMEIQIGEKLEKLRQLDEKSQIQRYKLVK

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=404680 VY92_RS04015 WP_035684730.1 836473..837822(-) (rarA) [Avibacterium paragallinarum strain AVPG2015]
ATGTCGAATTTTGCGTTTGATTTCGCTGAGAATGATTTTCGTCCGTTGGCGGCGAGAATGCGTCCTACGAATTTAGAGGA
ATATTATGGTCAACGCCATTTGATTGGTGTAGGTAAACCATTACGCAAAGCCATTGAAGCGGGGCATATTCATTCAATGA
TTTTATGGGGGCCGCCAGGGACGGGGAAGACGACCTTAGCAGAAATTATTGCACAACGCATTAATGCTGAAGTGGAACGA
ATTTCAGCGGTAACGGGGGGAGTGAAAGAAATTCGCGAAGCCATTGAGCGAGCTAAACAAAATCGCCTAACAGGACAACG
CACGATTTTGTTTGTGGACGAAGTGCATCGCTTCAACAAAAGCCAGCAAGATGCGTTTTTGCCCTACATTGAAGACGGCA
CGGTCACTTTTATTGGAGCGACCACAGAAAATCCCTCTTTTGAGTTGAACAACGCTTTGCTTTCTCGTGCCAAAGTGTAC
ATTTTAAAACCGCTCACGCCCCAAGATATTGAGCAAGTTTTGCAACGAGCCATTCAGGATAAAGAGAAAGGATTAGGCAA
TGAACATTTTGTGCTGGAAGATAATGTATTGCAGTTGCTGGCAGAATATGTGAATGGTGATGCCCGTTTGGCCTTGAACA
GCCTTGAATTAATGGCAGATATGGCAGAAGAGGGAAAAAATGGCAAAATTTTACACCGCACTTTATTAACGGAAGTGCTG
GGGGAACGGCAAGCCCGTTTTGATAAACAAGGGGATCGCTTTTACGATCTGATTTCCGCCTTGCATAAATCCGTGCGAGG
TTCATCACCTGATGCGGCGTTATATTGGTATGCACGTATTCTCACCGCAGGGGGGGATCCGCTTTATGTGGCACGGCGGT
TGCTTGCGATTGCGTCGGAAGATGTGGGCAATGCTGATCCGCGAGGAATGCAAGTGGCTCTTGCCGCGTGGGATTGCTTC
ACCCGTGTGGGAGCGGCTGAGGGGGAACGCGCCATTGCCCAAGCAATCGTCTATTTAGCGGTTGCACCAAAAAGTAATGC
GGTGTATCAAGCCTTTAACGCAGCGAAGAAAATGGCAGTGGAAAGCCCTGATTATGATGTACCAGAGCATTTACGCAATG
CACCAACGAAGTTGATGAAAGAATTAGGCTATGGGGCGGAATATCGTTACGCTCATAATGAAGAAAATGCCTATGCGGCG
GGAGAAAATTATTTTCCAGAAGCCTTGAAAGAAACGAAATTTTATTTTCCAACGCAACGGGGAATGGAAATTCAGATCGG
TGAGAAATTAGAAAAATTACGCCAACTTGACGAAAAAAGCCAAATTCAACGCTATAAACTCGTCAAGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-163)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

AAA C-terminal domain (AAA_assoc_2)

(187-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.119

91.537

0.376