Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GFX43_RS12890 Genome accession   NZ_CP046448
Coordinates   2536274..2537053 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain ZD01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2531274..2542053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS12860 (GFX43_012860) fliH 2531292..2532044 (-) 753 WP_015383659.1 flagellar assembly protein FliH -
  GFX43_RS12865 (GFX43_012865) fliG 2532037..2533053 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  GFX43_RS12870 (GFX43_012870) fliF 2533066..2534676 (-) 1611 WP_015483223.1 flagellar basal-body MS-ring/collar protein FliF -
  GFX43_RS12875 (GFX43_012875) fliE 2534722..2535042 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  GFX43_RS12880 (GFX43_012880) flgC 2535053..2535505 (-) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  GFX43_RS12885 (GFX43_012885) flgB 2535505..2535894 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  GFX43_RS12890 (GFX43_012890) codY 2536274..2537053 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GFX43_RS12895 (GFX43_012895) hslU 2537093..2538505 (-) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  GFX43_RS12900 (GFX43_012900) clpQ 2538513..2539058 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  GFX43_RS12905 (GFX43_012905) xerC 2539071..2539985 (-) 915 WP_015383656.1 tyrosine recombinase XerC -
  GFX43_RS12910 (GFX43_012910) trmFO 2540053..2541360 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=404408 GFX43_RS12890 WP_003220850.1 2536274..2537053(-) (codY) [Bacillus subtilis strain ZD01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=404408 GFX43_RS12890 WP_003220850.1 2536274..2537053(-) (codY) [Bacillus subtilis strain ZD01]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATCGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment