Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HWU11_RS06735 Genome accession   NZ_CP058285
Coordinates   1398749..1399033 (+) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT302     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1393749..1404033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU11_RS06710 - 1395140..1395988 (+) 849 WP_237008331.1 biotin synthase -
  HWU11_RS06715 - 1395988..1396866 (+) 879 WP_100981985.1 YihY family inner membrane protein -
  HWU11_RS06720 - 1397259..1398047 (+) 789 WP_237008956.1 integrase -
  HWU11_RS06725 - 1398050..1398280 (+) 231 WP_237008332.1 hypothetical protein -
  HWU11_RS06730 - 1398273..1398752 (+) 480 WP_237008333.1 hypothetical protein -
  HWU11_RS06735 comB2 1398749..1399033 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  HWU11_RS06740 comB3 1399045..1399308 (+) 264 WP_001177716.1 hypothetical protein Machinery gene
  HWU11_RS06745 - 1399320..1399553 (+) 234 WP_237008334.1 hypothetical protein -
  HWU11_RS06750 - 1399553..1400206 (+) 654 Protein_1321 transporter -
  HWU11_RS06755 - 1400243..1401520 (-) 1278 WP_237008113.1 RNA-guided endonuclease InsQ/TnpB family protein -
  HWU11_RS06760 - 1401495..1402148 (-) 654 WP_033617249.1 IS607-like element IS607 family transposase -
  HWU11_RS06765 - 1402201..1403667 (+) 1467 WP_237008335.1 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=404361 HWU11_RS06735 WP_000736106.1 1398749..1399033(+) (comB2) [Helicobacter pylori strain BT302]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=404361 HWU11_RS06735 WP_000736106.1 1398749..1399033(+) (comB2) [Helicobacter pylori strain BT302]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGTCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCTCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment