Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HWU11_RS05525 Genome accession   NZ_CP058285
Coordinates   1169952..1170725 (+) Length   257 a.a.
NCBI ID   WP_237008210.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT302     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164952..1175725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU11_RS05520 hopL 1166265..1169939 (+) 3675 WP_237008209.1 Hop family outer membrane protein HopL -
  HWU11_RS05525 proC 1169952..1170725 (+) 774 WP_237008210.1 pyrroline-5-carboxylate reductase Machinery gene
  HWU11_RS05530 fic 1170752..1171285 (+) 534 WP_000549887.1 protein adenylyltransferase Fic -
  HWU11_RS05535 ybeY 1171529..1171951 (-) 423 WP_237008211.1 rRNA maturation RNase YbeY -
  HWU11_RS05540 - 1172005..1172499 (-) 495 WP_033584038.1 flavodoxin -
  HWU11_RS05545 - 1172591..1173172 (-) 582 WP_237008212.1 DedA family protein -
  HWU11_RS05550 ccoS 1173297..1173488 (+) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HWU11_RS05555 - 1173514..1174488 (+) 975 WP_237008213.1 NAD(P)-binding domain-containing protein -
  HWU11_RS05560 - 1174495..1175655 (-) 1161 WP_237008214.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28130.78 Da        Isoelectric Point: 8.0301

>NTDB_id=404356 HWU11_RS05525 WP_237008210.1 1169952..1170725(+) (proC) [Helicobacter pylori strain BT302]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVSFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALSIIESFGNCVRVGNEELVD
ASVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVEMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=404356 HWU11_RS05525 WP_237008210.1 1169952..1170725(+) (proC) [Helicobacter pylori strain BT302]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAAATCACCGGAAGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTCTGAGCGCGTTAGCTGGCGTGAGTTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCCAATATCGCGAGCAAGTTCGCCCTTTCTTCTACAGCGGTGTGCGAAAAATCGGTTGCAC
CTTCAATAAGCGAGAAAGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGTTGGTGGAT
GCCAGCGTAGCGACAAACGGGAGCGCGCTTGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGATGATCATAGAGCAAATTTGCACCCCTAAAGGTGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTCATCAAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366