Detailed information NTG0404343

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HWU11_RS02070
• Genome accession: NZ_CP058285
• Coordinates: 424278..425453 (-)
• Length: 391 a.a.
• NCBI ID: WP_237008702.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BT302
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 419278..430453

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU11_RS02035	-	419604..419918 (+)	315	WP_001265941.1	hypothetical protein	-
HWU11_RS02040	-	419896..420663 (+)	768	WP_237008699.1	RNA polymerase sigma factor FliA	-
HWU11_RS02045	fliM	420656..421720 (+)	1065	WP_000763575.1	flagellar motor switch protein FliM	-
HWU11_RS02050	fliY	421724..422587 (+)	864	WP_237008700.1	flagellar motor switch protein FliY	-
HWU11_RS02055	-	422616..423152 (+)	537	WP_237008701.1	YhcH/YjgK/YiaL family protein	-
HWU11_RS02060	-	423149..423646 (+)	498	WP_000780289.1	DUF2147 domain-containing protein	-
HWU11_RS02065	fur	423666..424118 (-)	453	WP_000824996.1	ferric iron uptake transcriptional regulator	-
HWU11_RS02070	rarA	424278..425453 (-)	1176	WP_237008702.1	replication-associated recombination protein A	Machinery gene
HWU11_RS02075	-	425450..425821 (-)	372	WP_000332999.1	heat shock protein transcriptional repressor HspR	-
HWU11_RS02080	-	425831..426697 (-)	867	WP_237008703.1	DnaJ C-terminal domain-containing protein	-
HWU11_RS02085	-	426865..428115 (+)	1251	WP_237008704.1	outer membrane family protein	-
HWU11_RS02090	-	428213..429049 (-)	837	WP_237008705.1	5'-3' exonuclease	-
HWU11_RS02095	-	429306..430202 (-)	897	WP_100982456.1	OriC activity response regulator	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43877.63 Da
• Isoelectric Point: 8.7349

>NTDB_id=404343 HWU11_RS02070 WP_237008702.1 424278..425453(-) (rarA) [Helicobacter pylori strain BT302]
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILSFNATDFKLEDLRL
KLKNYQNALLKPIIFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCIK
ALTLLKKQIDPGAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTRYNLTSALIKSLRGSD
ENASMYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPHSKDYLYPHDYNGYIKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=404343 HWU11_RS02070 WP_237008702.1 424278..425453(-) (rarA) [Helicobacter pylori strain BT302]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAGTAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTAGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCATGCTAGAGCGCCCCATTCTTTCATTTAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACGCCCTTTTAAAACCCATTATTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGTATTAAA
GCTTTAACATTGCTCAAAAAACAAATAGATCCTGGTGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCGTTATAACCTCACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATGTATTATTTGGCGCGCTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCACCCAAGTCTAATACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTCATTCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATATCAAACAAGATTATTTGGAAAAACCCCTCAATTTAGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	37.136	100	0.391