Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HWU15_RS07625 Genome accession   NZ_CP058281
Coordinates   1607492..1607752 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hk711     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1602492..1612752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU15_RS08090 - 1602926..1603054 (-) 129 WP_268217798.1 hypothetical protein -
  HWU15_RS07615 - 1603054..1604988 (-) 1935 WP_237016071.1 type IA DNA topoisomerase -
  HWU15_RS07620 - 1604981..1607479 (-) 2499 Protein_1489 type IV secretion system DNA-binding domain-containing protein -
  HWU15_RS07625 comB3 1607492..1607752 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  HWU15_RS07630 - 1607753..1608055 (-) 303 WP_237015449.1 TrbC/VirB2 family protein -
  HWU15_RS07635 - 1608045..1609961 (-) 1917 WP_237015450.1 toprim domain-containing protein -
  HWU15_RS07640 - 1609972..1610736 (-) 765 WP_088297852.1 hypothetical protein -
  HWU15_RS07645 - 1610792..1612699 (+) 1908 Protein_1494 HsdR family type I site-specific deoxyribonuclease -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=404322 HWU15_RS07625 WP_000602756.1 1607492..1607752(-) (comB3) [Helicobacter pylori strain Hk711]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=404322 HWU15_RS07625 WP_000602756.1 1607492..1607752(-) (comB3) [Helicobacter pylori strain Hk711]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453