Detailed information NTG0404258

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HWU18_RS03185
• Genome accession: NZ_CP058252
• Coordinates: 682778..683953 (+)
• Length: 391 a.a.
• NCBI ID: WP_237004689.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain NP05-124
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 677778..688953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU18_RS03160	-	678024..678920 (+)	897	WP_089086707.1	OriC activity response regulator	-
HWU18_RS03165	-	679146..680012 (+)	867	WP_237004767.1	5'-3' exonuclease	-
HWU18_RS03170	-	680119..681366 (-)	1248	WP_237004688.1	outer membrane family protein	-
HWU18_RS03175	-	681534..682400 (+)	867	WP_015644023.1	DnaJ C-terminal domain-containing protein	-
HWU18_RS03180	-	682410..682781 (+)	372	WP_000332999.1	heat shock protein transcriptional repressor HspR	-
HWU18_RS03185	rarA	682778..683953 (+)	1176	WP_237004689.1	replication-associated recombination protein A	Machinery gene
HWU18_RS03190	fur	684113..684565 (+)	453	WP_000825001.1	ferric iron uptake transcriptional regulator	-
HWU18_RS03195	-	684585..685082 (-)	498	WP_000780279.1	DUF2147 domain-containing protein	-
HWU18_RS03200	-	685079..685615 (-)	537	WP_237004690.1	YhcH/YjgK/YiaL family protein	-
HWU18_RS03205	fliY	685644..686507 (-)	864	WP_025276749.1	flagellar motor switch protein FliY	-
HWU18_RS03210	fliM	686511..687575 (-)	1065	WP_237004691.1	flagellar motor switch protein FliM	-
HWU18_RS03215	-	687568..688335 (-)	768	WP_100966966.1	RNA polymerase sigma factor FliA	-
HWU18_RS03220	-	688313..688627 (-)	315	WP_000868000.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43818.32 Da
• Isoelectric Point: 7.9977

>NTDB_id=404258 HWU18_RS03185 WP_237004689.1 682778..683953(+) (rarA) [Helicobacter pylori strain NP05-124]
MSLTALLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLECPILSFSATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFTFELTPLNKSDLDRLCDK
ALTLLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLKSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYHEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPHSKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=404258 HWU18_RS03185 WP_237004689.1 682778..683953(+) (rarA) [Helicobacter pylori strain NP05-124]
ATGAGCCTGACTGCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCTCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTTTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCTCGCTCCCTAGAGTGCCCCATTCTTTCATTTAGTGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTACTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAACATTGTTAAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTCAAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGTGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCCTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCATGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTCCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTCATTCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGACTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	37.5	100	0.399