Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HWU19_RS05385 Genome accession   NZ_CP058251
Coordinates   1158592..1159365 (+) Length   257 a.a.
NCBI ID   WP_237016256.1    Uniprot ID   -
Organism   Helicobacter pylori strain UBN18     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1153592..1164365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU19_RS05380 hopL 1154940..1158578 (+) 3639 WP_237016255.1 Hop family outer membrane protein HopL -
  HWU19_RS05385 proC 1158592..1159365 (+) 774 WP_237016256.1 pyrroline-5-carboxylate reductase Machinery gene
  HWU19_RS05390 fic 1159392..1159925 (+) 534 WP_237016257.1 protein adenylyltransferase Fic -
  HWU19_RS05395 ybeY 1160015..1160437 (-) 423 WP_237016258.1 rRNA maturation RNase YbeY -
  HWU19_RS05400 - 1160491..1160985 (-) 495 WP_237016259.1 flavodoxin -
  HWU19_RS05405 - 1161077..1161658 (-) 582 WP_237016260.1 DedA family protein -
  HWU19_RS05410 ccoS 1161782..1161973 (+) 192 WP_001090941.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HWU19_RS05415 - 1161999..1162967 (+) 969 WP_237016261.1 NAD(P)-binding domain-containing protein -
  HWU19_RS05420 - 1163175..1164335 (-) 1161 WP_237016262.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28238.94 Da        Isoelectric Point: 8.3369

>NTDB_id=404226 HWU19_RS05385 WP_237016256.1 1158592..1159365(+) (proC) [Helicobacter pylori strain UBN18]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAQSVLSALAGVGFKALSDAIDSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=404226 HWU19_RS05385 WP_237016256.1 1158592..1159365(+) (proC) [Helicobacter pylori strain UBN18]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAGATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCCAAAGCGTTTTGAGCGCGCTAGCTGGCGTGGGTTTTAAAGCTTTAAGCGATGCGATAGATTCTTT
ACATTACTTAAAATGCATGCCCAATATCGCGAGCAAGTTTGCCCTTTCTTCTACAGCGGTGTGCGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTTGAT
TCTAGCGTGGCGACAAACGGGAGCGCGCTCGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGAAAATGAGTTTTAAGGGTTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGATGATCATAGAGCAAATTTGCACCCCTAAAGGTGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAAAAGCATGCCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362