Detailed information NTG0404175

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HWI84_RS02045
• Genome accession: NZ_CP058250
• Coordinates: 417438..418613 (-)
• Length: 391 a.a.
• NCBI ID: WP_237013365.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain AL02
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 412438..423613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWI84_RS02010	-	412745..413059 (+)	315	WP_000868000.1	hypothetical protein	-
HWI84_RS02015	-	413037..413813 (+)	777	WP_187857937.1	RNA polymerase sigma factor FliA	-
HWI84_RS02020	fliM	413806..414870 (+)	1065	WP_000763576.1	flagellar motor switch protein FliM	-
HWI84_RS02025	fliY	414874..415746 (+)	873	WP_237013362.1	flagellar motor switch protein FliY	-
HWI84_RS02030	-	415773..416309 (+)	537	WP_237013363.1	YhcH/YjgK/YiaL family protein	-
HWI84_RS02035	-	416306..416806 (+)	501	WP_237013364.1	DUF2147 domain-containing protein	-
HWI84_RS02040	fur	416826..417278 (-)	453	WP_187852298.1	ferric iron uptake transcriptional regulator	-
HWI84_RS02045	rarA	417438..418613 (-)	1176	WP_237013365.1	replication-associated recombination protein A	Machinery gene
HWI84_RS02050	-	418610..418975 (-)	366	WP_187857943.1	heat shock protein transcriptional repressor HspR	-
HWI84_RS02055	-	418985..419851 (-)	867	WP_237013366.1	DnaJ C-terminal domain-containing protein	-
HWI84_RS02060	-	420019..421269 (+)	1251	WP_237013367.1	outer membrane family protein	-
HWI84_RS02065	-	421331..422197 (-)	867	WP_237013598.1	5'-3' exonuclease	-
HWI84_RS02070	-	422423..423319 (-)	897	WP_180590807.1	OriC activity response regulator	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43829.44 Da
• Isoelectric Point: 7.8110

>NTDB_id=404175 HWI84_RS02045 WP_237013365.1 417438..418613(-) (rarA) [Helicobacter pylori strain AL02]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=404175 HWI84_RS02045 WP_237013365.1 417438..418613(-) (rarA) [Helicobacter pylori strain AL02]
ATGAGCTTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCGCGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTC
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTCTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCCAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCGCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTTGCTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	37.136	100	0.391