Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GNY17_RS10565 Genome accession   NZ_CP046411
Coordinates   2058253..2058978 (+) Length   241 a.a.
NCBI ID   WP_069537396.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-021-D1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2053253..2063978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNY17_RS10550 (GNY17_10545) - 2054356..2056677 (+) 2322 WP_015296085.1 Tex family protein -
  GNY17_RS10555 (GNY17_10550) - 2056813..2057277 (-) 465 WP_005459035.1 hypothetical protein -
  GNY17_RS10560 (GNY17_10555) bioH 2057401..2058168 (-) 768 WP_029843267.1 pimeloyl-ACP methyl ester esterase BioH -
  GNY17_RS10565 (GNY17_10560) comF 2058253..2058978 (+) 726 WP_069537396.1 ComF family protein Machinery gene
  GNY17_RS10570 (GNY17_10565) nfuA 2059076..2059660 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GNY17_RS10575 (GNY17_10570) nudE 2059881..2060450 (+) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  GNY17_RS10580 (GNY17_10575) cysQ 2060492..2061319 (+) 828 WP_086585136.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GNY17_RS10585 (GNY17_10580) - 2061605..2062366 (-) 762 WP_024703495.1 type II secretion system protein N -
  GNY17_RS10590 (GNY17_10585) - 2062368..2062859 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27736.89 Da        Isoelectric Point: 8.9991

>NTDB_id=404133 GNY17_RS10565 WP_069537396.1 2058253..2058978(+) (comF) [Vibrio parahaemolyticus strain 19-021-D1]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=404133 GNY17_RS10565 WP_069537396.1 2058253..2058978(+) (comF) [Vibrio parahaemolyticus strain 19-021-D1]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAACGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment