Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GD442_RS18400 Genome accession   NZ_CP046398
Coordinates   3678220..3678999 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus sp. A260     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3673220..3683999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD442_RS18375 (GD442_18380) uppS 3673969..3674745 (-) 777 WP_000971296.1 isoprenyl transferase -
  GD442_RS18380 (GD442_18385) frr 3674831..3675388 (-) 558 WP_000531501.1 ribosome recycling factor -
  GD442_RS18385 (GD442_18390) pyrH 3675391..3676113 (-) 723 WP_000042668.1 UMP kinase -
  GD442_RS18390 (GD442_18395) tsf 3676180..3677067 (-) 888 WP_001018578.1 translation elongation factor Ts -
  GD442_RS18395 (GD442_18400) rpsB 3677171..3677872 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  GD442_RS18400 (GD442_18405) codY 3678220..3678999 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GD442_RS18405 (GD442_18410) hslU 3679077..3680468 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  GD442_RS18410 (GD442_18415) hslV 3680491..3681033 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  GD442_RS18415 (GD442_18420) xerC 3681076..3681975 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  GD442_RS18420 (GD442_18425) trmFO 3682041..3683345 (-) 1305 WP_000213003.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=403914 GD442_RS18400 WP_000421290.1 3678220..3678999(-) (codY) [Bacillus sp. A260]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=403914 GD442_RS18400 WP_000421290.1 3678220..3678999(-) (codY) [Bacillus sp. A260]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment