Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CAR_RS04110 Genome accession   NC_015391
Coordinates   844698..846395 (+) Length   565 a.a.
NCBI ID   WP_238526720.1    Uniprot ID   -
Organism   Carnobacterium sp. 17-4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 839698..851395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAR_RS04090 (CAR_c08120) dapF 840800..841780 (+) 981 WP_013710448.1 diaminopimelate epimerase -
  CAR_RS04095 (CAR_c08130) cspD 841944..842144 (+) 201 WP_013710449.1 cold-shock protein CspD -
  CAR_RS04100 (CAR_c08140) - 842368..842790 (+) 423 WP_052303156.1 MarR family transcriptional regulator -
  CAR_RS04105 (CAR_c08150) rcrP 842822..844600 (+) 1779 WP_041556166.1 ABC transporter ATP-binding protein Regulator
  CAR_RS04110 (CAR_c08160) rcrQ 844698..846395 (+) 1698 WP_238526720.1 ABC transporter ATP-binding protein Regulator
  CAR_RS04115 (CAR_c08170) - 846676..846927 (-) 252 WP_013710453.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  CAR_RS04120 (CAR_c08180) - 847106..848326 (-) 1221 WP_013710454.1 toxic anion resistance protein -
  CAR_RS04125 (CAR_c08190) - 848346..849050 (-) 705 WP_052303132.1 5-bromo-4-chloroindolyl phosphate hydrolysis family protein -
  CAR_RS04130 (CAR_c08200) - 849303..849854 (+) 552 WP_013710456.1 NUDIX hydrolase -
  CAR_RS04135 (CAR_c08210) macP 849874..850125 (+) 252 WP_013710457.1 cell wall synthase accessory phosphoprotein MacP -
  CAR_RS04140 (CAR_c08220) - 850145..850837 (+) 693 WP_013710458.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  CAR_RS04145 (CAR_c08230) - 850915..851388 (-) 474 WP_013710459.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 62586.93 Da        Isoelectric Point: 4.7538

>NTDB_id=40369 CAR_RS04110 WP_238526720.1 844698..846395(+) (rcrQ) [Carnobacterium sp. 17-4]
MMYIIVAFVFAIFGTVFNLIGPDRLSEITDIITAGITGAIDLEKIKSIGLFLVTLYILGAILSYFQGFIMATVTQTVTKK
LRTDISTKINRLPLRYFDSNNHGDILSRVTNDVDTIGQTLNQSLGQLVTSISLFIGSLIMMFYTNVPMAFSAILSTVIGF
GLMITIIKRSQKYFSQQQKSLGELNGHVEEIYTGHNIVKAFNGEESAIEEFNQINDTLFDSAWKSQYISGLMMPLMNFIG
NFGYVVVCVVGAYLAFNDQITFGVIVAFMMYIRFFTQPLSQIAQAFTSLQSAAAASERVFNFLEEEELEVETGKPTSLGT
VKGNVTFDHVKFGYNPDRLIINDFSLEAKAGQKIAIVGPTGAGKTTLVNLLMRFYEVNSGEIYIDGTPISSVTRGALHEQ
FCMVLQDTWLFEGTVRENIVYSKKGVKDEEVVNACKAVGVHHFIQTLPHGYDTILDDTTSLSAGQKQLMTIARAMVADAP
LLILDEATSSVDTRTELIIQKAMDSLMHGRTSFVIAHRLSTIKNADLIIVMKDGDVVESGNHDVLLQQNGFYADLYNSQF
DQEEE

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=40369 CAR_RS04110 WP_238526720.1 844698..846395(+) (rcrQ) [Carnobacterium sp. 17-4]
ATGATGTACATTATAGTAGCATTTGTATTTGCTATTTTCGGTACAGTATTTAATTTAATAGGTCCTGATCGTCTTAGTGA
AATTACAGATATTATCACTGCAGGTATTACAGGTGCTATAGATTTAGAAAAAATAAAAAGTATTGGATTATTTTTAGTTA
CGTTGTATATTCTTGGTGCAATTTTATCTTATTTCCAAGGATTTATTATGGCTACTGTAACTCAAACCGTTACAAAAAAA
TTGCGTACAGATATTTCAACAAAAATTAATCGTTTACCATTACGTTATTTTGATAGCAACAACCATGGAGACATTTTGAG
CCGTGTAACAAATGATGTTGATACAATTGGTCAAACTTTAAACCAAAGTTTAGGTCAGTTGGTAACCTCTATTAGTTTAT
TTATCGGTTCATTGATTATGATGTTTTATACAAATGTTCCGATGGCTTTCTCTGCCATCCTATCAACCGTTATCGGTTTT
GGTTTAATGATCACAATTATTAAAAGGTCACAAAAATATTTCAGTCAACAACAGAAAAGTTTAGGTGAATTAAACGGTCA
TGTTGAAGAAATATATACAGGTCACAATATTGTAAAAGCATTTAATGGTGAAGAGTCAGCGATTGAAGAATTTAATCAAA
TCAATGATACATTATTTGATAGTGCTTGGAAGTCTCAATACATTTCAGGTCTAATGATGCCGTTAATGAACTTTATTGGG
AACTTTGGATATGTAGTGGTCTGTGTAGTCGGAGCTTATTTAGCGTTTAATGATCAAATCACTTTTGGTGTGATTGTTGC
CTTTATGATGTATATTCGTTTCTTTACGCAACCTCTTTCACAGATTGCACAAGCTTTTACTAGTTTGCAATCAGCAGCTG
CAGCTAGTGAACGTGTCTTTAATTTCTTAGAAGAAGAAGAGTTAGAAGTCGAAACTGGAAAACCAACTTCATTAGGTACT
GTTAAAGGAAATGTTACATTCGACCATGTGAAATTTGGGTACAATCCTGATAGACTAATCATTAATGATTTCTCTCTAGA
GGCTAAAGCTGGACAAAAAATTGCAATCGTAGGTCCAACGGGGGCAGGTAAGACGACATTAGTAAACTTGTTAATGCGCT
TCTATGAAGTGAATAGTGGAGAAATCTACATTGATGGAACACCGATTTCCAGTGTTACTAGAGGAGCGTTACACGAACAA
TTCTGTATGGTATTACAAGATACTTGGTTATTTGAAGGAACGGTTAGAGAAAATATTGTCTACAGTAAAAAAGGTGTAAA
AGATGAAGAAGTAGTCAATGCTTGTAAGGCAGTTGGAGTACATCATTTCATTCAGACATTGCCACACGGCTACGATACGA
TTTTAGATGATACAACAAGTTTATCTGCTGGACAAAAACAATTAATGACGATTGCTCGTGCAATGGTCGCAGATGCACCA
TTATTGATTTTGGATGAAGCAACAAGTTCTGTTGATACACGTACTGAACTGATCATTCAAAAAGCAATGGATAGCTTAAT
GCATGGAAGAACTTCTTTCGTTATTGCACATCGTCTATCAACTATTAAAAATGCAGATTTGATTATTGTGATGAAAGATG
GAGATGTAGTAGAAAGTGGAAACCATGATGTTTTATTGCAGCAAAATGGATTTTATGCAGATCTTTACAATAGTCAATTT
GATCAAGAAGAAGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(4-279)

ABC transporter (ABC_tran)

(342-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.932

98.761

0.602

Multiple sequence alignment