Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SALIVA_RS09790 Genome accession   NC_017595
Coordinates   2130085..2131353 (-) Length   422 a.a.
NCBI ID   WP_002887077.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2125085..2136353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS09755 (SALIVA_1998) - 2125100..2126110 (-) 1011 WP_014635149.1 YeiH family protein -
  SALIVA_RS09760 (SALIVA_1999) - 2126380..2126889 (-) 510 WP_014635150.1 helix-turn-helix domain-containing protein -
  SALIVA_RS10850 - 2127097..2127279 (+) 183 WP_041826713.1 hypothetical protein -
  SALIVA_RS09770 (SALIVA_2000) - 2127325..2128302 (+) 978 WP_014635151.1 replication initiation protein -
  SALIVA_RS09775 (SALIVA_2001) - 2128314..2128502 (+) 189 WP_002903611.1 DUF3173 domain-containing protein -
  SALIVA_RS09780 (SALIVA_2002) - 2128504..2129643 (+) 1140 WP_014635152.1 site-specific integrase -
  SALIVA_RS09790 (SALIVA_2004) rarA 2130085..2131353 (-) 1269 WP_002887077.1 replication-associated recombination protein A Machinery gene
  SALIVA_RS09795 (SALIVA_2005) rpmB 2131524..2131712 (+) 189 WP_002885786.1 50S ribosomal protein L28 -
  SALIVA_RS09800 (SALIVA_2006) - 2131839..2132105 (+) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  SALIVA_RS09805 (SALIVA_2007) ruvX 2132105..2132524 (+) 420 WP_002887078.1 Holliday junction resolvase RuvX -
  SALIVA_RS09810 (SALIVA_2008) - 2132631..2132936 (+) 306 WP_002887079.1 DUF1292 domain-containing protein -
  SALIVA_RS09815 (SALIVA_2009) - 2133148..2134794 (+) 1647 WP_014635153.1 membrane protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46598.07 Da        Isoelectric Point: 5.8803

>NTDB_id=40347 SALIVA_RS09790 WP_002887077.1 2130085..2131353(-) (rarA) [Streptococcus salivarius JIM8777]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTLASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=40347 SALIVA_RS09790 WP_002887077.1 2130085..2131353(-) (rarA) [Streptococcus salivarius JIM8777]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGAATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGACCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTG
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTTCTAGATGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTGCCACTCTTAGAGAATGGCAATATTATCATGATTGGGGCTACGACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATCCTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACGCTAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTACTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGACGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGAATTTTGATTGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
AAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAACAACAATATCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATCGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.143

99.289

0.597

Multiple sequence alignment