Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   SALIVA_RS09430 Genome accession   NC_017595
Coordinates   2061156..2061386 (-) Length   76 a.a.
NCBI ID   WP_014635119.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2056156..2066386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS09395 (SALIVA_1922) - 2056546..2056992 (-) 447 WP_014635112.1 hypothetical protein -
  SALIVA_RS09400 (SALIVA_1923) - 2057070..2057726 (-) 657 WP_014635113.1 CPBP family intramembrane glutamic endopeptidase -
  SALIVA_RS09405 (SALIVA_1924) - 2057738..2057935 (-) 198 WP_014635114.1 helix-turn-helix transcriptional regulator -
  SALIVA_RS09410 (SALIVA_1925) - 2058186..2059379 (-) 1194 WP_014635115.1 acetate kinase -
  SALIVA_RS09415 (SALIVA_1926) comGH 2059436..2060392 (-) 957 WP_014635116.1 class I SAM-dependent methyltransferase Machinery gene
  SALIVA_RS09420 (SALIVA_1927) comGG 2060437..2060754 (-) 318 WP_041826709.1 competence type IV pilus minor pilin ComGG Machinery gene
  SALIVA_RS09425 (SALIVA_1928) comGF 2060732..2061169 (-) 438 WP_014635118.1 competence type IV pilus minor pilin ComGF Machinery gene
  SALIVA_RS09430 (SALIVA_1929) comGE 2061156..2061386 (-) 231 WP_014635119.1 competence type IV pilus minor pilin ComGE Machinery gene
  SALIVA_RS09435 (SALIVA_1930) comGD 2061418..2061846 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  SALIVA_RS09440 (SALIVA_1931) comGC 2061806..2062120 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  SALIVA_RS09445 (SALIVA_1932) comGB 2062129..2063229 (-) 1101 WP_148263031.1 competence type IV pilus assembly protein ComGB Machinery gene
  SALIVA_RS09450 (SALIVA_1933) comGA/cglA/cilD 2063111..2064052 (-) 942 WP_002887018.1 competence type IV pilus ATPase ComGA Machinery gene
  SALIVA_RS09455 (SALIVA_1934) - 2064132..2064494 (-) 363 WP_014635121.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8457.82 Da        Isoelectric Point: 8.7317

>NTDB_id=40340 SALIVA_RS09430 WP_014635119.1 2061156..2061386(-) (comGE) [Streptococcus salivarius JIM8777]
MAVLVLVSGLILDQINTNRRLMARNLHQQEVLSVATMAVQTKQDQLTLNGITVTVKRSQQGIEVYESGKEIIHVSQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=40340 SALIVA_RS09430 WP_014635119.1 2061156..2061386(-) (comGE) [Streptococcus salivarius JIM8777]
ATGGCTGTCTTAGTACTCGTCAGTGGTCTTATCTTGGATCAGATCAATACCAATCGTAGGCTAATGGCTAGGAATCTCCA
CCAACAGGAGGTTTTGAGTGTGGCAACCATGGCAGTTCAGACCAAACAGGATCAGTTGACTTTAAATGGTATCACAGTGA
CAGTAAAACGTAGCCAGCAAGGTATCGAGGTTTATGAATCAGGAAAGGAGATTATTCATGTCTCTCAATAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(1-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

39.189

97.368

0.382
  comGE Streptococcus mutans UA159

39.189

97.368

0.382
  comGE/cglE Streptococcus pneumoniae Rx1

36.842

100

0.368
  comGE/cglE Streptococcus pneumoniae D39

36.842

100

0.368
  comGE/cglE Streptococcus pneumoniae R6

36.842

100

0.368
  comGE/cglE Streptococcus pneumoniae TIGR4

36.842

100

0.368

Multiple sequence alignment