Detailed information NTG0040331

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: SALIVA_RS08960
• Genome accession: NC_017595
• Coordinates: 1978728..1981232 (+)
• Length: 834 a.a.
• NCBI ID: WP_014635056.1
• Uniprot ID: -
• Organism: Streptococcus salivarius JIM8777
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1973728..1986232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SALIVA_RS08940 (SALIVA_1833)	-	1975947..1976489 (-)	543	WP_002884677.1	CvpA family protein	-
SALIVA_RS08945 (SALIVA_1834)	zapA	1976486..1976800 (-)	315	WP_004183554.1	cell division protein ZapA	-
SALIVA_RS08950 (SALIVA_1835)	rnhC	1977117..1978007 (+)	891	WP_014635054.1	ribonuclease HIII	-
SALIVA_RS08955 (SALIVA_1836)	lepB	1978026..1978667 (+)	642	WP_014635055.1	signal peptidase I	-
SALIVA_RS08960 (SALIVA_1837)	recD/recD2/recDB	1978728..1981232 (+)	2505	WP_014635056.1	ATP-dependent RecD-like DNA helicase	Machinery gene
SALIVA_RS08965 (SALIVA_1838)	-	1981284..1981610 (-)	327	WP_014635057.1	AzlD domain-containing protein	-
SALIVA_RS08970 (SALIVA_1839)	-	1981597..1982289 (-)	693	WP_014635058.1	AzlC family ABC transporter permease	-
SALIVA_RS08975 (SALIVA_1840)	tsaD	1982341..1983354 (-)	1014	WP_014635059.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
SALIVA_RS08980 (SALIVA_1841)	rimI	1983354..1983809 (-)	456	WP_037602742.1	ribosomal protein S18-alanine N-acetyltransferase	-
SALIVA_RS08985 (SALIVA_1842)	tsaB	1983769..1984455 (-)	687	WP_014635061.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SALIVA_RS08990 (SALIVA_1843)	-	1984716..1984946 (+)	231	WP_002884752.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94112.41 Da
• Isoelectric Point: 4.4758

>NTDB_id=40331 SALIVA_RS08960 WP_014635056.1 1978728..1981232(+) (recD/recD2/recDB) [Streptococcus salivarius JIM8777]
MQEFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQISNLSKVNREAFVAKLKINYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEVQGIGFKIADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLESARQIELDPALVAKELTNLIQEDKVQNIETKIFDNTLYFAEQGIYTHLTRIMKDQPDISAEDKIQVSL
EEVEEELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHSLNLKKSDLPIILAAPTGRAARRMNEL
TQLPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPADFTEKKADRSYFEANTNHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNHQEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVRNEG
AKRNTFLIQRFEQTYTQAVDKSVEKIVKNEATGASNQTKTKNNDPSETLENKDFSENINPSQDLVNTYSQPVDKSVNKPV
QTEENYRLTEENWTTIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=40331 SALIVA_RS08960 WP_014635056.1 1978728..1981232(+) (recD/recD2/recDB) [Streptococcus salivarius JIM8777]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTCGAAAACGCTAGTAATTTTTTTCGTATCCTTCTCTT
AGAAATTGACGAAACAGACAGTGATTTTGAGGACTATGAAATCATTGTTACCGGAACCATGGGAGATGTCATGGAAGGTG
AGGATTATACCTTCTGGGGTCAGTTAACCAATCATCCCAAATATGGTGAACAACTCCAAATGACACGCTACGAACGGTCT
AAACCTTCTGCTAGCGGTCTTATCAAGTATTTCGCCAGCGACAATTTTAAGGGGATTGGTAAGAAAACAGCTGAGCGTAT
TGTCGAGATCTATGGCGAAGACCCAATTGACAAGATTCTCGAAGATCCTAGCAAGTTAGAGCAGATTTCCAACCTTTCAA
AGGTAAACCGAGAAGCCTTCGTTGCAAAGTTAAAAATCAACTATGGAACCGAACAAATCTTGTCCAAACTTTCCAGCTAT
GGACTCACACCAAAAGCTGCCTCACAAATTTTCAATCAATATAAGGAAGAATCGCTCAATCTTATCGAGGAACACCCTTA
TCTCTTGGTAGAGGAAGTTCAAGGAATCGGATTTAAAATAGCTGACCAACTGGCCGAACGCCTAGGGATTGCTAGTGATG
CTCCTGAGCGTTTACGAGCTGCCTTGATTCATTGTCTGCTAGAAGCCAGTATGGAAGAAGGCGACACCTACATCGAAGCC
AAAGCTTTGCTCGAACGAACTATCATTCTTTTGGAAAGTGCTCGTCAGATTGAACTTGACCCTGCCTTGGTCGCTAAGGA
ATTAACCAATCTCATCCAAGAGGACAAAGTGCAAAATATAGAGACTAAAATCTTTGATAATACCCTTTATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAAGACCAACCTGACATCAGTGCAGAGGACAAAATCCAAGTAAGTCTT
GAAGAGGTGGAAGAGGAACTTGGTATTACTTATGATAAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACTACCGTTATTAACGGAATTATTAAAACCTATGCTGACCTTCATA
GTCTAAATCTCAAAAAGTCTGATTTGCCTATTATTTTAGCGGCACCAACAGGACGGGCTGCTCGTCGGATGAACGAACTC
ACCCAACTCCCTAGCGCCACTATCCATAGACATTTGGGCCTCAATAGCGAGGACGATTTCAAGACCTTAGAGGACTATCT
CGATTGCGACTTGATTATCATCGATGAGTTTTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTTGAAAGTATCTCTG
ATTCAACCCAAGTCATCATCGTGGGTGACCAAGACCAGCTGCCTTCCGTAGGTCCTGGCCAGGTCTTGGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCTCTGACCAAAATTTTCAGACAATCTGAGGACTCCACTATCGTTACCTTAGCTAG
CCAGATGCGACAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAATACCAACC
ATATTCCACAGATGGTTCCTAAAATTGTCTCTGCCGCTATAAAGAGCGGGATCGCTGCTCAGGATGTGCAGATTCTAGCT
CCCATGTATCGAGGACAGGCTGGTATTAACAATCTCAATACCATTATGCAGGACCTACTTAATCATCAAGAAAAGGCCAA
TCAGTTTGCCTTTAATGATATTTTCTTCCGTAAGAACGACAAAATTCTCCATCTGGTCAACGATACCGAACTCAATGTCT
TCAATGGCGACATCGGCATCATTACTGATCTCATCCCTGGTAAATATACTGAAAGCAAGCAGGACGAAATTTACATGTCC
TTTGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCAATCCACAAATC
TCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGACAAAGTGGACGTATGCTACAACGTAACCTCATCTACA
CCGCCATCACACGTGCCAAGAGTAAGCTAGTCATGTTAGGGGAAATCGCAGCCTTTGATTATGCCGTTCGCAACGAAGGA
GCTAAACGAAATACTTTTCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACGAGGCAACAGGCGCCTCCAATCAAACAAAAACGAAAAACAACGACCCCTCAGAAACCCTTGAAAACAAAGACT
TTTCGGAAAATATCAATCCATCCCAAGATCTTGTTAACACTTATTCACAGCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGACAACTATAGATCCAATGATTGGTCTCAGTGAAGACGACAT
TGCTGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• AAA domain (AAA_30) (331-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	44.8	89.928	0.403